Publikationen
_{Molekularbiologie}

Out, A.; van Minderhout, I.; Goeman, J.; Ariyurek, Y.; Ossowski, S.; Schneeberger, K.; Weigel, D.; van Galen, M.; Taschner, P.; Tops, C. et al.; Breuning, M.; van Ommen, G.-J.; den Dunnen, J.; Devilee, P.; Hes, F.: Deep sequencing to reveal new variants in pooled DNA samples. Human Mutations 30 (12), S. 1703 - 1712 (2009)

Schweikert, G.; Zien, A.; Zeller, G.; Behr, J.; Dieterich, C.; Ong, C.; Philips, P.; De Bona, F.; Hartmann, L.; Bohlen, A. et al.; Krüger, N.; Sonnenburg, S.; Rätsch, G.: mGene: Accurate SVM-based gene finding with an application to nematode genomes. Genome Research 19 (11), S. 2133 - 2143 (2009)

Rubio-Somoza, I.; Cuperus, J.; Weigel, D.; Carrington, J.: Regulation and functional specialization of small RNA-target nodes during plant development. Current Opinion in Plant Biology 12 (5), S. 622 - 627 (2009)

Schwartz, C.; Balasubramanian, S.; Warthmann, N.; Todd, P.; Lempe, J.; Sureshkumar, S.; Kobayashi, Y.; Maloof, J.; Borevitz, J.; Chory, J. et al.; Weigel, D.: Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. Genetics 183 (2), S. 723 - 732 (2009)

Yant, L.; Mathieu, J.; Schmid, M.: Just say no: floral repressors help Arabidopsis bide the time. Current Opinion in Plant Biology 12 (5), S. 580 - 586 (2009)

Mirouze, M.; Reinders, J.; Bucher, E.; Nishimura, T.; Schneeberger, K.; Ossowski, S.; Cao, J.; Weigel, D.; Paszkowski, J.; Mathieu, O.: Selective epigenetic control of retrotransposition in Arabidopsis. Nature 461 (7262), S. 427 - 430 (2009)

Schneeberger, K.; Hagmann, J.; Ossowski, S.; Warthmann, N.; Gesing, S.; Kohlbacher, O.; Weigel, D.: Simultaneous alignment of short reads against multiple genomes. Genome Biology 10 (9), R98 (2009)

Schneeberger, K.; Ossowski, S.; Lanz, C.; Juul, T.; Petersen, A.; Nielsen, K.; Jørgensen, J.-E.; Weigel, D.; Andersen, S.: SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nature Methods 6 (8), S. 550 - 551 (2009)

Schultheiss, S.; Busch, W.; Lohmann, J.; Kohlbacher, O.; Rätsch, G.: KIRMES: kernel-based identification of regulatory modules in euchromatic sequences. Bioinformatics 25 (16), S. 2126 - 2133 (2009)

Wang, J.-W.; Czech, B.; Weigel, D.: miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana. Cell 138 (4), S. 738 - 749 (2009)

Wu, G.; Park, M.; Conway, S.; Wang, J.-W.; Weigel, D.; Poethig, R.: The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell 138 (4), S. 750 - 759 (2009)

Mathieu, J.; Yant, L.; Mürdter, F.; Küttner, F.; Schmid, M.: Repression of flowering by the miR172 target SMZ. PLoS Biology 7 (7), e1000148 (2009)

McNally, K.; Childs, K.; Bohnert, R.; Davidson, R.; Zhao, K.; Ulat, V.; Zeller, G.; Clark, R.; Hoen, T.; Bureau, D. et al.; Stokowski, R.; Ballinger, D.; Frazer, K.; Cox, D.; Padhukasahasram, B.; Bustamante, C.; Weigel, D.; Mackill, D.; Bruskiewich, R.; Rätsch, G.; Buell, C.; Leung, H.; Leach, J.: Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proceedings of the National Academy of Sciences of the United States of America 106 (30), S. 12273 - 12278 (2009)

Schweikert, G.; Behr, J.; Zien, A.; Zeller, G.; Ong, C.; Sonnenburg, S.; Rätsch, G.: mGene.web: a web service for accurate computational gene finding. Nucleic Acids Research (London) 37 (Supplement 2), S. W312 - W316 (2009)

Weigel, D.; Glazebrook, J.: Phenotypic analysis of Arabidopsis mutants: bacterial pathogens. Cold Spring Harbor protocols 4 (7), pdb.prot4983 (2009)

Tripathi, N.; Hoffmann, M.; Willing, E.-M.; Lanz, C.; Weigel, D.; Dreyer, C.: Genetic linkage map of the guppy, Poecilia reticulata, and quantitative trait loci analysis of male size and colour variation. Proceedings of the Royal Society B: Biological Sciences 276 (1665), S. 2195 - 2208 (2009)

Zeller, G.; Henz, S.; Widmer, C.; Sachsenberg, T.; Rätsch, G.; Weigel, D.; Laubinger, S.: Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays. The Plant Journal 58 (6), S. 1068 - 1082 (2009)

Maier, A.; Stehling-Sun, S.; Wollmann, H.; Demar, M.; Hong, R.; Haubeiß, S.; Weigel, D.; Lohmann, J.: Dual roles of the bZIP transcription factor PERIANTHIA in the control of floral architecture and homeotic gene expression. Development 136 (10), S. 1613 - 1620 (2009)

Trigueros, M.; Navarrete-Gómez, M.; Sato, S.; Christensen, S.; Pelaz, S.; Weigel, D.; Yanofsky, M.; Ferrándiz, C.: The NGATHA genes direct style development in the Arabidopsis gynoecium. Plant Cell 21 (5), S. 1394 - 1409 (2009)

Tripathi, N.; Hoffmann, M.; Weigel, D.; Dreyer, C.: Linkage analysis reveals the independent origin of Poeciliid sex chromosomes and a case of atypical sex inheritance in the guppy (Poecilia reticulata). Genetics 182 (1), S. 365 - 374 (2009)