Publications
_{Molecular Biology}

Chen, H.; Xiong, F.; Wangler, A.-M.; Bischoff, T.; Wang, K.; Miao, Y.; Slane, D.; Schwab, R.; Laux, T.; Bayer, M.: Phosphorylation-Dependent Activation of the bHLH Transcription Factor ICE1/SCRM Promotes Polarization of the Arabidopsis Zygote. New Phytologist Epub ahead (2024)

Garrison, E.; Guarracino, A.; Heumos, S.; Villani, F.; Bao, Z.; Tattini, T.; Hagmann, J.; Vorbrugg, S.; Marco-Sola, S.; Kubica, C. et al.; Ashbrook, G.; Thorell, K.; Rusholme-Pilcher, R.; Liti, G.; Rudbeck, E.; Golicz, A.; Nahnsen, S.; Yang, Z.; Mwaniki, M.; Nobrega, F.; Wu, Y.; Chen, H.; de Ligt, J.; Sudmant, P.; Huang, S.; Weigel, D.; Soranzo, N.; Colonna, V.; Williams, R.; Prins, P.: Building pangenome graphs. Nature Methods 21 (11), pp. 2008 - 2012 (2024)

Koren, S.; Bao, Z.; Guarracino, A.; Ou, S.; Goodwin, S.; Jenike, K.; Lucas, J.; McNulty, B.; Park, J.; Rautiainen, M. et al.; Rhie, A.; Roelofs, D.; Schneiders, H.; Vrijenhoek, I.; Nijbroek, K.; Nordesjo, O.; Nurk, S.; Vella, M.; Lawrence, K.; Ware, D.; Schatz, M.; Garrison, E.; Huang, S.; McCombie, W.; Miga, K.; Wittenberg, A.; Phillippy, A.: Gapless assembly of complete human and plant chromosomes using only nanopore sequencing. Genome Research Epub ahead (2024)

Lotharukpong, J.; Zheng, M.; Luthringer, R.; Liesner, D.; Drost, H.-G.; Coelho, S.: A Transcriptomic Hourglass In Brown Algae. Nature 635 (8037), pp. 129 - 135 (2024)

Karasov, T.; Neumann, M.; Leventhal, L.; Symeonidi, E.; Shirsekar, G.; Hawks, A.; Monroe, G.; Pathodopsis Team ; Expósito-Alonso, M.; Bergelson, J. et al.; Weigel, D.; Schwab, R.: Continental-scale associations of Arabidopsis thaliana phyllosphere members with host genotype and drought. Nature Microbiology 9 (10), pp. 2748 - 2758 (2024)

Liu, T.; Liu, H.; Xian, W.; Liu, Z.; Yuan, Y.; Fan, J.; Xiang, S.; Yang, X.; Liu, Y.; Liu, S. et al.; Zhang, M.; Shen, Y.; Jiao, Y.; Cheng, S.; Doyle, J.; Xie, F.; Li, J.; Tian, Z.: Duplication and sub-functionalization of flavonoid biosynthesis genes plays important role in Leguminosae root nodule symbiosis evolution. Journal of Integrative Plant Biology 66 (10), pp. 2191 - 2207 (2024)

Sunil, S.; Beeh, S.; Stöbbe, E.; Fischer, K.; Wilhelm, F.; Meral, A.; Paris, C.; Teasdale, L.; Jiang, Z.; Zhang, L. et al.; Urban, M.; Aguilar Parras, E.; Nürnberger, T.; Weigel, D.; Lozano-Duran, R.; El Kasmi, F.: Activation of an atypical plant NLR with an N-terminal deletion initiates cell death at the vacuole. EMBO Reports 25 (10), pp. 4358 - 4386 (2024)

Voichek, Y.; Hristova, G.; Mollá-Morales, A.; Weigel, D.; Nordborg, M.: Widespread position-dependent transcriptional regulatory sequences in plants. Nature Genetics 56 (10), pp. 2238 - 2246 (2024)

Wegner, H.; Roitman, S.; Kupczok, A.; Braun, V.; Woodhouse, J.; Grossart, H.-P.; Zehner, S.; Béjà, O.; Frankenberg-Dinkel, N.: Identification of Shemin pathway genes for tetrapyrrole biosynthesis in bacteriophage sequences from aquatic environments. Nature Communications 15 (1), 8713 (2024)

Whiting, J.; Booker, T.; Rougeux , C.; Lind, B.; Singh, P.; Lu, M.; Huang, K.; Whitlock , M.; Aitken, S.; Andrew, R. et al.; Borevitz, J.; Bruhl, J.; Collins, T.; Fischer, M.; Hodgins, K.; Holliday, J.; Ingvarsson, P.; Janes, J.; Khandaker, M.; Koenig, D.; Kreiner, J.; Kremer, A.; Lascoux, M.; Leroy, T.; Milesi, P.; Murray, K.; Pyhäjärvi, T.; Rellstab, C.; Rieseberg, L.; Roux, F.; Stinchcombe, J.; Telford, I.; Todesco, M.; Tyrmi , J.; Wang, B.; Weigel, D.; Willi, Y.; Wright, S.; Zhou, L.; Yeaman, S.: The genetic architecture of repeated local adaptation to climate in distantly related plants. Nature Ecology & Evolution 8 (10), pp. 1933 - 1947 (2024)

Cury, J.; Haudiquet, M.; Hernandez Trejo, V.; Mordret, E.; Hanouna, A.; Rotival, M.; Tesson, F.; Bonhomme, D.; Ofir, G.; Quintana-Murci, L. et al.; Benaroch, P.; Poirier, E.; Bernheim, A.: Conservation of antiviral systems across domains of life reveals immune genes in humans. Cell Host & Microbe 32 (9), pp. 1594 - 1607 (2024)

Huang, G.; Bao, Z.; Feng, L.; Zhai, J.; Wendel, J.; Cao, X.; Zhu, Y.: A telomere-to-telomere cotton genome assembly reveals centromere evolution and a Mutator transposon-linked module regulating embryo development. Nature Genetics 56 (9), pp. 1953 - 1963 (2024)

Lang, P.; Erberich, J.; Lopez, L.; Weiß, C.; Amador, G.; Fung, H.; Latorre, S.; Lasky, J.; Burbano, H.; Expósito-Alonso, M. et al.; Bergmann, D.: Century-long timelines of herbarium genomes predict plant stomatal response to climate change. Nature Ecology & Evolution 8 (9), pp. 1641 - 1653 (2024)

Liu, T.; Liu, Z.; Yuan, Y.; Liu, H.; Xian, W.; Xiang, S.; Yang, X.; Liu, Y.; Liu, S.; Zhang, M. et al.; Jiao, Y.; Cheng, S.; Doyle, J.; Xie, F.; Li, J.; Tian, Z.: Loss of Lateral suppressor gene is associated with evolution of root nodule symbiosis in Leguminosae. Genome Biology: Biology for the Post-Genomic Era 25 (1), 250 (2024)

Saarenpää, S.; Shalev, O.; Ashkenazy, H.; Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatial metatranscriptomics resolves host-bacteria-fungi interactomes. Nature Biotechnology 42 (9), pp. 1384 - 1393 (2024)

Tao, Y.; Xian, W.; Bao, Z.; Rabanal, F.; Movilli, A.; Lanz, C.; Shirsekar, G.; Weigel, D.: Atlas of telomeric repeat diversity in Arabidopsis thaliana. Genome Biology: Biology for the Post-Genomic Era 25 (1), 244 (2024)

Vasseur, F.; Baldrich, P.; Jiménez-Góngora, T.; Villar-Martin, L.; Weigel, D.; Rubio-Somoza, I.: miR472 deficiency enhances Arabidopsis thaliana defense without reducing seed production. Molecular Plant-Microbe Interactions Epub ahead (2024)

Cheng, S.; Feng, C.; Wingen, L.; Cheng, H.; Riche, A.; Jiang, M.; Leverington-Waite, M.; Huang, Z.; Collier, S.; Orford, S. et al.; Wang, X.; Awal, R.; Barker, G.; O'Hara , T.; Lister, C.; Siluveru, A.; Quiroz-Chávez, J.; Ramírez-González, R.; Bryant, R.; Berry, S.; Bansal, U.; Bariana, H.; Bennett, M.; Bicego, B.; Bilham, L.; Brown, J.; Burridge, A.; Burt, C.; Buurman, M.; Castle, M.; Chartrain, L.; Chen, B.; Denbel, W.; Elkot, A.; Fenwick , P.; Feuerhelm, D.; Foulkes, J.; Gaju, O.; Gauley, A.; Gaurav, K.; Hafeez, A.; Han, R.; Horler, R.; Hou, J.; Iqbal, M.; Kerton, M.; Kondic-Spica, A.; Kowalski, A.; Lage, J.; Li, X.; Liu, H.; Liu, S.; Lovegrove, A.; Ma, L.; Mumford, C.; Parmar, S.; Philp, C.; Playford, D.; Przewieslik-Allen , A.; Sarfraz, Z.; Schafer, D.; Shewry, P.; Shi, Y.; Slafer, G.; Song, B.; Song, B.; Steele, D.; Steuernagel , B.; Tailby, P.; Tyrrell, S.; Waheed, A.; Wamalwa, M.; Wang, X.; Wei, Y.; Winfield, M.; Wu, S.; Wu, Y.; Wulff, B.; Xian, W.; Xu, Y.; Xu, Y.; Yuan, Q.; Zhang, X.; Edwards, K.; Dixon, L.; Nicholson, P.; Chayut, N.; Hawkesford , M.; Uauy, C.; Sanders, D.; Huang, S.; Griffiths, S.: Harnessing landrace diversity empowers wheat breeding. Nature 632 (8026), pp. 823 - 831 (2024)

Drost, H.-G.: How ancient genes form animal body plans. Nature Reviews Genetics 25 (7), p. 458 (2024)

Backman, T.; Latorre, S.; Symeonidi, E.; Muszyński, A.; Bleak , E.; Eads, L.; Martinez-Koury, P.; Som, S.; Hawks, A.; Gloss, A. et al.; Belnap, D.; Manuel, A.; Deutschbauer, A.; Bergelson, J.; Azadi, P.; Burbano, H.; Karasov, T.: A phage tail-like bacteriocin suppresses competitors in metapopulations of pathogenic bacteria. Science 384 (6701), eado0713 (2024)