Grimm, D.; Hagmann, J.; Koenig, D.; Weigel, D.; Borgwardt, K.: Support Vector Machines for finding deletions and short insertions using paired-end short reads. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB ECCB 2011), Wien, Austria (2011)

Jean, G.; Raetsch, G.; Kahles, A.; Sonnenburg, S.; Schneeberger, K.; Hagmann, J.; De Bona, F.; Weigel, D.: Fast and Accurate RNA-Seq alignments with PALMapper. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB ECCB 2011), Wien, Austria (2011)

Drewe, P.; Stegle, O.; Behr, J.; Clark, R.; Rätsch, G.; Mott, R.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. 4th Berlin Summer Meeting: “Computational & Experimental Molecular Biology Meet”, Berlin, Germany (2011)

Drewe, P.; Stegle, O.; Bohnert, R.; Borgwardt, K.; Rätsch, G.: Statistical tests for detecting differential RNA-transcript expression. 4th Berlin Summer Meeting: “Computational & Experimental Molecular Biology Meet”, Berlin, Germany (2011)

Reinke, V.; Ewing, B.; Gerstein, M.; Green, P.; Henz, S.; High, A.; Hillier, L.; Kato, M.; Leng, J.; MacCoss, M. et al.; Merrihew, G.; Miller, D.; Rätsch, G.; Robilotto, R.; Slack, F.; Spencer, W.; Strasbourger, P.; Thompson, O.; Wang, G.; Zeller, G.; Waterston, R.: The C. elegans transcriptome. 18th International C. Elegans Meeting, Los Angeles, CA, USA (2011)

Salomé, P.; Oliva, M.; Krämer, U.; Weigel, D.: Tuning of circadian period by micronutrients availability in Arabidopsis. 22nd International Conference on Arabidopsis Research (ICAR 2011), Madison, WI, USA (2011)

Van Buskirk, E.; Wang, H.; Li, M.; Galvao, R.; Ma, T.; Weigel, D.; Chen, M.: Genetic Dissection of Early Phytochrome Signaling Mechanisms. 22nd International Conference on Arabidopsis Research (ICAR 2011), Madison, WI, USA (2011)

Wahl, V.; Ponnu, J.; Schlereth, A.; Arrivault, S.; Franke, A.; Feil, R.; Lunn, J.; Schmid, M.; Stitt, M.: Trehalose 6-phosphate acts at the shoot apex to induce flowering in Arabidopsis thaliana. 22nd International Conference on Arabidopsis Research (ICAR 2011), Madison, WI, USA (2011)

Forestan, C.; Mainieri, D.; Engledow, S.; Rossi, V.; Gutierrez-Marcos, C.; Weigel, D.; Rouster, J.; Varotto, S.: Environmental stress-induced epiallele formation and inheritance in Zea mays: a multiple approach. 53rd Annual Maize Genetics Conference, St. Charles, IL, USA (2011)

Behr, J.; Zeller, G.; Schweikert, G.; Hartmann, L.; Smith, L.; Rätsch, G.: De Novo RNA-seq-based genome annotation. Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference: Genome Informatics, Hinxton, UK (2010)

Stegle, O.; Drewe, P.; Bohnert, R.; Borgwardt, K.; Rätsch, G.: Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts. Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference: Genome Informatics, Hinxton, UK (2010)

Shervashidze, N.; Smola, A.; Borgwardt, K.: Scalable graph kernels with approximate matching of subtree patterns. 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA (2010)

Drewe, P.; Stegle, O.; Bohnert, R.; Borgwardt, K.; Rätsch, G.: Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts. 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA (2010)

Lippert, C.; Stegle, O.; Nickisch, H.; Borgwardt, K.; Weigel, D.: Experimental design for genome-wide association studies. 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA (2010)

Rätsch, G.; Jean, G.; Kahles, A.; Sonnenburg, S.; De Bona, F.; Schneeberger, K.; Hagmann, J.; Weigel, D.: PALMapper: Fast and Accurate Spliced Alignments of Sequence Reads. 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA (2010)

Chae, E.; Bomblies, K.; Lanz, C.; Weigel, D.: Divergent Alleles of Disease Resistance Gene Lead to Hybrid Incompatibility in Arabidopsis Thaliana. 21st International Conference on Arabidopsis Research (ICAR 2010), Yokohama, Japan (2010)

Felippes, F.; Ott, F.; Weigel, D.: Characterization of the Non-Cell Autonomous Effect of miRNAs and tasiRNAs in Arabidopsis Thaliana. 21st International Conference on Arabidopsis Research (ICAR 2010), Yokohama, Japan (2010)

Ho, W.-H.; Weigel, D.: Critical Amino Acid Changes Convert a Floral Promoter into Repressor. 21st International Conference on Arabidopsis Research (ICAR 2010), Yokohama, Japan (2010)

Kim, S.-T.; Weigel, D.: Differential Plastic Responses or Local Adaptions? Insights from Phenotyping Natural Populations. 21st International Conference on Arabidopsis Research (ICAR 2010), Yokohama, Japan (2010)

Manavella, P.; Toth, R.; Coupland, G.; Weigel, D.: Identification of miRNA Biogenesis Modulators by forward and Chemical Genetics. 21st International Conference on Arabidopsis Research (ICAR 2010), Yokohama, Japan (2010)