Publikationen von J Söding

Moussian, B.; Söding, J.; Schwarz, H.; Nüsslein-Volhard, C.: Retroactive, a membrane-anchored extracellular protein related to vertebrate snake neurotoxin-like proteins, is required for cuticle organization in the larva of Drosophila melanogaster. Developmental Dynamics 233 (3), S. 1056 - 1063 (2005)

Söding, J.; Biegert, A.; Lupas, A.: The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Research (London) 33 (Web Server issue), S. W244 - W248 (2005)

Coles, M.; Djuranovic, S.; Söding, J.; Frickey, T.; Koretke, K.; Truffault, V.; Martin, J.; Lupas, A.: AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels. Structure 13 (6), S. 919 - 928 (2005)

Söding, J.: Protein homology detection by HMM-HMM comparison. Bioinformatics 21 (7), S. 951 - 960 (2005)

Söding, J.; Lupas, A.: More than the sum of their parts: on the evolution of proteins from peptides. Bioessays 25 (9), S. 837 - 846 (2003)

Söding, J.: Protein structure and function prediction by pairwise comparison of hidden Markov models. In: Forschung und wissenschaftliches Rechnen: Beiträge zum Heinz-Billing-Preis 2006, S. 51 - 68 (Hg. Kremer, K.; Macho, V.). Gesellschaft für wissenschaftliche Datenverarbeitung mbH, Göttingen, Germany (2007)

Alva, V.; Nam, S.-Z.; Rau, D.; Stephens, A.; Kübler, J.; Lozajic, M.; Gabler, F.; Söding, J.; Lupas, A.: The MPI Bioinformatics Toolkit and its application to protein analysis and design. In 7th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, S. 5. 7th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, 03. September 2017 - 08. September 2017. (2017)

Fischer, J.; Lupas, A.; Söding, J.: A Novel Conservation Score For Functional Residue Prediction. In Automated Function Prediction: Biosapiens Joint Special Interest Group Meeting, S. 67. Automated Function Prediction: Biosapiens Joint Special Interest Group Meeting, Wien, Austria, 19. Juli 2007 - 20. Juli 2007. (2007)

Soeding, J.: Origin of bacterial transmembrane beta-barrels by duplication of a beta-beta hairpin. In 15th Annual International Conference on Intelligent Systems for Molecular Biology & 6th European Conference on Computational Biology (ISMB/ECCB 2007), PLoS Track: 10. 15th Annual International Conference on Intelligent Systems for Molecular Biology & 6th European Conference on Computational Biology (ISMB/ECCB 2007), Wien, Austria, 21. Juli 2007 - 25. Juli 2007. (2007)

Lupas, A.; Söding, J.: Homology-based structure prediction by HMM-HMM comparison and stochastic alignment sampling. In Critical Assessment of Techniques for Protein Structure Prediction: Seventh Meeting: CASP7, S. 11. Seventh Meeting Critical Assessment of Techniques for Protein Structure Prediction (CASP7), Pacific Grove, CA, USA, 26. November 2006 - 30. November 2006. (2006)

Söding, J.: Homology-based structure, function, and domain prediction by HMM-HMM comparison. In Critical Assessment of Techniques for Protein Structure Prediction: Seventh Meeting: CASP7, S. 53. Seventh Meeting Critical Assessment of Techniques for Protein Structure Prediction (CASP7), Pacific Grove, CA, USA, 26. November 2006 - 30. November 2006. (2006)

Söding, J.: Homology-based structure prediction by HMM-HMM comparison and multiple template selection. In Critical Assessment of Techniques for Protein Structure Prediction: Seventh Meeting: CASP7, S. 53 - 54. Seventh Meeting Critical Assessment of Techniques for Protein Structure Prediction (CASP7), Pacific Grove, CA, USA, 26. November 2006 - 30. November 2006. (2006)

Söding, J.: Homology-based structure, function, and domain prediction by HMM-HMM comparison, multiple template selection, and intermediate profile search. In Critical Assessment of Techniques for Protein Structure Prediction: Seventh Meeting: CASP7, S. 54 - 55. Seventh Meeting Critical Assessment of Techniques for Protein Structure Prediction (CASP7), Pacific Grove, CA, USA, 26. November 2006 - 30. November 2006. (2006)

Söding, J.: Homology detection and 3D structure prediction by HMM-HMM comparison. In Sixth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP6), S. 66 - 67. Sixth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP6), Gaeta, Italy, 04. Dezember 2004 - 08. Dezember 2004. (2004)

Söding, J.; Biegert, A.; Lupas, A.: HHpred web server for distant homology detection and structure prediction. In Sixth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP6), S. 177 - 178. Sixth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP6), Gaeta, Italy, 04. Dezember 2004 - 08. Dezember 2004. (2004)

Soeding, J.; Lupas, A.: Homology Search By HMM-HMM Comparison Detects More Than Three Times As Many Remote Homologs as PSIBLAST or HMMER. In 1st Structural Bioinformatics Meeting at ISMB/ECCB2004, 41, S. 21 - 22. 1st Structural Bioinformatics Meeting at ISMB/ECCB 2004, Glasgow, UK, 29. Juli 2004 - 30. Juli 2004. (2004)

Alva Kullanja, V.; Soeding, J.; Lupas, A.: On the origin of folded proteins from ancient peptides. 23rd Annual International Conference on Intelligent Systems for Molecular Biology, 14th European Conference on Computational Biology (ISMB ECCB 2015), Dublin, Ireland (2015)

Karpenahalli, M.; Söding, J.; Lupas, A.: Evolution of Tetratrico Peptide Repeats. 12th Annual International Conference on Intelligent Systems for Molecular Biology & 3rd European Conference on Computational Biology (ISMB ECCB 2004), Glasgow, UK (2004)