Publikationen von J Söding

Zhang, R.; Mirdita, M.; Levy Karin, E.; Norroy, C.; Galiez, C.; Söding, J.: SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts. Bioinformatics 37 (19), S. 3364 - 3366 (2021)

Alva, V.; Söding, J.; Lupas, A.: A vocabulary of ancient peptides at the origin of folded proteins. eLife 4, e09410 (2015)

Armache, J.; Jarasch, A.; Anger, A.; Villa, E.; Becker, T.; Bhushan, S.; Jossinet, F.; Habeck, M.; Dindar, G.; Franckenberg, S. et al.; Marquez, V.; Mielke, T.; Thomm, M.; Berninghausen, O.; Beatrix, B.; Soeding, J.; Westhof, E.; Wilson, D.; Beckmann, R.: Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome. Proceedings of the National Academy of Sciences of the United States of America 107 (46), S. 19754 - 19759 (2010)

Armache, J.-P.; Jarasch, A.; Anger, A.; Villa, E.; Becker, T.; Bhushan, S.; Jossinet, F.; Habeck, M.; Dindar, G.; Franckenberg , S. et al.; Marguez, V.; Mielke, T.; Thomm, M.; Berninghausen, O.; Beatrix, B.; Soeding, J.; Westhof, E.; Wilson, D.; Beckmann, R.: Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-Å resolution. Proceedings of the National Academy of Sciences of the United States of America 107 (46), S. 19748 - 19753 (2010)

Remmert, M.; Biegert, A.; Linke, D.; Lupas, A.; Soeding, J.: Evolution of Outer Membrane β-Barrels from an Ancestral ββ Hairpin. Molecular Biology and Evolution 27 (6), S. 1348 - 1358 (2010)

Alva, V.; Remmert, M.; Biegert, A.; Lupas, A.; Söding, J.: A galaxy of folds. Protein Science 19 (1), S. 124 - 130 (2010)

Remmert, M.; Linke, D.; Lupas, A.; Söding, J.: HHomp-prediction and classification of outer membrane proteins. Nucleic Acids Research (London) 37 (Web Server issue), S. W446 - W451 (2009)

Chaudhuri, I.; Söding, J.; Lupas, A.: Evolution of the beta-propeller fold. Proteins: Structure, Function, and Bioinformatics 71 (2), S. 795 - 803 (2008)

Biegert, A.; Söding, J.: De novo identification of highly diverged protein repeats by probabilistic consistency. Bioinformatics 24 (6), S. 807 - 814 (2008)

Fischer, J.; Mayer, C.; Söding, J.: Prediction of protein functional residues from sequence by probability density estimation. Bioinformatics 24 (5), S. 613 - 620 (2008)

Hsiao, N.-H.; Söding, J.; Linke, D.; Lange, C.; Hertweck, C.; Wohlleben, W.; Takano, E.: ScbA from Streptomyces coelicolor A3(2) has homology to fatty acid synthases and is able to synthesize γ-butyrolactones. Microbiology 153 (5), S. 1394 - 1404 (2007)

Alva, V.; Ammelburg, M.; Söding, J.; Lupas, A.: On the origin of the histone fold. BMC Structural Biology 7, 17 (2007)

Karpenahalli, M.; Lupas, A.; Söding, J.: TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences. BMC Bioinformatics 8, 2 (2007)

Gruber, M.; Söding, J.; Lupas, A.: Comparative analysis of coiled-coil prediction methods. Journal of Structural Biology 155 (2), S. 140 - 145 (2006)

Biegert, A.; Mayer, C.; Remmert, M.; Söding, J.; Lupas, A.: The MPI Bioinformatics toolkit for protein sequence analysis. Nucleic Acids Research (London) 34 (Web Server issue), S. W335 - W339 (2006)

Söding, J.; Remmert, M.; Biegert, A.: HHrep: de novo protein repeat detection and the origin of TIM barrels. Nucleic Acids Research (London) 34 (Web Server issue), S. W137 - W142 (2006)

Söding, J.; Remmert, M.; Biegert, A.; Lupas, A.: Why do crosses between closely related species fail? Recent results suggest that mis-regulation of gene silencing contributes to hybrid failure. Nucleic Acids Research (London) 34 (Web Server issue), S. W374 - W378 (2006)

Söding, J.; Remmert, M.; Biegert, A.; Lupas, A.: HHsenser: Exhaustive transitive profile search using HMM-HMM comparison. Nucleic Acids Research (London) 34 (Web Server issue), S. W374 - W378 (2006)

Albrecht, R.; Zeth, K.; Söding, J.; Lupas, A.; Linke, D.: Expression, crystallization and preliminary X-ray crystallographic studies of the outer membrane protein OmpW from Escherichia coli. Acta Crystallographica Section F: Structural Biology and Crystallization Communications 62 (4), S. 415 - 418 (2006)

Gruber, M.; Söding, J.; Lupas, A.: REPPER-repeats and their periodicities in fibrous proteins. Nucleic Acids Research (London) 33 (Web Server issue), S. W239 - W243 (2005)