Publications
^{_{Protein Evolution}}

Borbaran Bravo, N.; Deordieva, E.; Doll, L.; ElGamacy, M.; Dannenmann, B.; Azevedo, J.; Iannuzzo, A.; Delafontaine, S.; Lehnerz, M.; Kolodziej, M. et al.; Hernandez-Alvarez, B.; Hellmuth, A.-S.; Findik, B.; Zakharova, V.; Bräuning, S.; Kandabarau, S.; Lengerke, C.; Feil, R.; Meytz, I.; Delon, J.; Templin, M.; Sturm, M.; Rieß, O.; Zeidler, C.; Welte, K.; Shcherbina, A.; Klimiankou, M.; Skokowa, J.: A New Severe Congenital Neutropenia Syndrome Associated with Autosomal Recessive COPZ1 Mutations. Blood (accepted)

Curtis, Z.; Escudeiro, P.; Mallon, J.; Leland, O.; Rados , T.; Dodge, A.; Andre, K.; Kwak, J.; Yun, K.; Issac, B. et al.; Martinez Pastor, M.; Schmid, A.; Pohlschroder, M.; Alva, V.; Bisson, A.: Halofilins as Emerging Bactofilin Families of Archaeal Cell Shape Plasticity Orchestrators. Proceedings of the National Academy of Sciences of the United States of America 121 (40), e2401583121 (2024)

Fruet, C.; Martinez-Goikoetxea, M.; Merino, F.; Lupas, A.: A computational model for lipid-anchored polysaccharide export by the outer-membrane protein GfcD. Biophysical Journal 123 (20), pp. 3491 - 3499 (2024)

Piselli, C.: How to isolate channel-forming membrane proteins using the E. coli expression system. Nature Protocols Epub ahead (2024)

Ullrich, T.; Klimenkova, O.; Pollmann, C.; Lasram, A.; Hatskovska, V.; Maksymenko, K.; Milijaš-Jotić, M.; Schenk, L.; Lengerke, C.; Hartmann, M. et al.; Piehler, J.; Skokowa, J.; ElGamacy, M.: A Strategy to Design Protein-based Antagonists Against Type I Cytokine Receptors. PLOS Biology (accepted)

Schwab, S.; Hu, Y.; van Erp, B.; Kajili, M.; Hartmann, M.; Hernandez-Alvarez, B.; Alva, V.; Boyle, A.; Dame, R.: Novel histones and histone variant families in prokaryotes. Nature Communications 15 (1), 7950 (2024)

Hu, Y.; Schwab, S.; Deiss, S.; Escudeiro, P.; van Heesch, T.; Joiner, J.; Vreede, J.; Hartmann, M.; Lupas, A.; Hernandez Alvarez, B. et al.; Alva, V.; Dame, R.: Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. Nucleic Acids Research 52 (14), gkae485, pp. 8193 - 8204 (2024)

Fuchs, A.: Detection and quantification of C-terminally tagged proteins by in-gel fluorescence. Scientific Reports 14 (1), 15697 (2024)

Grin, I.; Maksymenko, K.; Wörtwein, T.; ElGamacy, M.: The Damietta Server: a comprehensive protein design toolkit. Nucleic Acids Research 52 (W1), gkae297, pp. W200 - W206 (2024)

Iyengar, B.; Grandchamp, A.; Bornberg-Bauer, E.: How antisense transcripts can evolve to encode novel proteins. Nature Communications 15 (1), 6187 (2024)

Lebherz, K.; Iyengar, B.; Bornberg-Bauer, E.: Modeling Length Changes in De Novo Open Reading Frames during Neutral Evolution. Genome Biology and Evolution 16 (7), evae129 (2024)

Lebherz, M.; Fouks, B.; Schmidt, J.; Bornberg-Bauer, E.; Grandchamp, A.: DNA Transposons Favor De Novo Transcript Emergence Through Enrichment of Transcription Factor Binding Motifs. Genome Biology and Evolution 16 (7), evae134 (2024)

Hertle, E.; Ursinus, A.; Martin, J.: Low-temperature features of the psychrophilic chaperonin from Pseudoalteromonas haloplanktis. Archives of Microbiology 206 (7), 299 (2024)

Selim, K.; Alva, V.: PII-like signaling proteins: a new paradigm in orchestrating cellular homeostasis. Current Opinion in Microbiology 79, 102453 (2024)

von Kügelgen , A.; Cassidy, C.; van Dorst, S.; Pagani, L.; Batters, C.; Ford, Z.; Löwe, J.; Alva, V.; Stansfeld, P.; Bharat, T.: Membraneless channels sieve cations in ammonia-oxidizing marine archaea. Nature 630 (8015), pp. 230 - 236 (2024)

Aubel, M.; Buchel, F.; Heames, B.; Jones, A.; Honc, O.; Bornberg-Bauer, E.; Hlouchova, K.: High-throughput selection of human de novo-emerged sORFs with high folding potential. Genome Biology and Evolution 16 (4), evae069 (2024)

Mantovani, O.; Haffner, M.; Walke, P.; Elshereef, A.; Wagner, B.; Petras, D.; Forchhammer, K.; Selim, K.; Hagemann, M.: The redox-sensitive R-loop of the carbon control protein SbtB contributes to the regulation of the cyanobacterial CCM. Scientific Reports 14 (1), 7885 (2024)

Röhl, A.; Netz, E.; Kohlbacher, O.; Elhabashy, H.: CLAUDIO: Automated structural analysis of cross-linking data. Bioinformatics 40 (4), btae146 (2024)

Shevalev, O.; Bischof, L.; Sapegin, A.; Bunev, A.; Grigoreva, O.; Kantin , G.; Kalinin, S.; Hartmann, M.: Discovery and characterization of potent spiro-isoxazole-based cereblon ligands with a novel binding mode. European Journal of Medicinal Chemistry 270, 116328 (2024)

Luthringer, R.; Raphalen, M.; Guerra, C.; Colin, S.; Martinho, C.; Zheng, M.; Hoshino, M.; Badis, Y.; Lipinska, A.; Haas, F. et al.; Barrera-Redondo, J.; Alva, V.; Coelho, S.: Repeated co-option of HMG-box genes for sex determination in brown algae and animals. Science 283 (6689), eadk5466 (2024)