Publications
^{_{Protein Evolution}}

Madaj, R.; Martinez-Goikoetxea, M.; Kaminski, K.; Ludwiczak, J.; Dunin-Horkawicz, S.: Applicability of AlphaFold2 in the modeling of dimeric, trimeric, and tetrameric coiled-coil domains. Protein Science 34 (1), e5244 (2025)

Borbaran Bravo, N.; Deordieva, E.; Doll, L.; ElGamacy, M.; Dannenmann, B.; Azevedo, J.; Iannuzzo, A.; Delafontaine, S.; Lehnerz, M.; Kolodziej, M. et al.; Hernandez-Alvarez, B.; Hellmuth, A.-S.; Findik, B.; Zakharova, V.; Bräuning, S.; Kandabarau, S.; Lengerke, C.; Feil, R.; Meytz, I.; Delon, J.; Templin, M.; Sturm, M.; Rieß, O.; Zeidler, C.; Welte, K.; Shcherbina, A.; Klimiankou, M.; Skokowa, J.: A New Severe Congenital Neutropenia Syndrome Associated with Autosomal Recessive COPZ1 Mutations. Blood Epub ahead (2024)

Braun, V.: Substrate Uptake by TonB-Dependent Outer Membrane Transporters. Molecular Microbiology Epub ahead (2024)

Martinez-Goikoetxea, M.: CCfrag: Scanning folding potential of coiled-coil fragments with AlphaFold. Bioinformatics Advances Epub ahead (2024)

Klett, T.; Stahlecker, J.; Jaag, S.; Masberg, B.; Knappe, C.; Lämmerhofer, M.; Coles, M.; Stehle, T.; Boeckler, F.: Covalent Fragments Acting as Tyrosine Mimics for Mutant p53-Y220C Rescue by Nucleophilic Aromatic Substitution. ACS Pharmacology & Translational Science Epub ahead (2024)

Landau, M.; Elsabbagh, S.; Gross, H.; Fuchs, A.; Schultz, A.; Schultz, J.: The membrane domains of mammalian adenylyl cyclases are lipid receptors. eLife 13, RP101483 (2024)

Curtis, Z.; Escudeiro, P.; Mallon, J.; Leland, O.; Rados , T.; Dodge, A.; Andre, K.; Kwak, J.; Yun, K.; Issac, B. et al.; Martinez Pastor, M.; Schmid, A.; Pohlschroder, M.; Alva, V.; Bisson, A.: Halofilins as Emerging Bactofilin Families of Archaeal Cell Shape Plasticity Orchestrators. Proceedings of the National Academy of Sciences of the United States of America 121 (40), e2401583121 (2024)

Fruet, C.; Martinez-Goikoetxea, M.; Merino, F.; Lupas, A.: A computational model for lipid-anchored polysaccharide export by the outer-membrane protein GfcD. Biophysical Journal 123 (20), pp. 3491 - 3499 (2024)

Piselli, C.: How to isolate channel-forming membrane proteins using the E. coli expression system. Nature Protocols Epub ahead (2024)

Ullrich, T.; Klimenkova, O.; Pollmann, C.; Lasram, A.; Hatskovska, V.; Maksymenko, K.; Milijaš-Jotić, M.; Schenk, L.; Lengerke, C.; Hartmann, M. et al.; Piehler, J.; Skokowa, J.; ElGamacy, M.: A Strategy to Design Protein-based Antagonists Against Type I Cytokine Receptors. PLOS Biology (accepted)

Schwab, S.; Hu, Y.; van Erp, B.; Kajili, M.; Hartmann, M.; Hernandez-Alvarez, B.; Alva, V.; Boyle, A.; Dame, R.: Novel histones and histone variant families in prokaryotes. Nature Communications 15 (1), 7950 (2024)

Hu, Y.; Schwab, S.; Deiss, S.; Escudeiro, P.; van Heesch, T.; Joiner, J.; Vreede, J.; Hartmann, M.; Lupas, A.; Hernandez Alvarez, B. et al.; Alva, V.; Dame, R.: Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. Nucleic Acids Research 52 (14), gkae485, pp. 8193 - 8204 (2024)

Fuchs, A.: Detection and quantification of C-terminally tagged proteins by in-gel fluorescence. Scientific Reports 14 (1), 15697 (2024)

Grin, I.; Maksymenko, K.; Wörtwein, T.; ElGamacy, M.: The Damietta Server: a comprehensive protein design toolkit. Nucleic Acids Research 52 (W1), gkae297, pp. W200 - W206 (2024)

Iyengar, B.; Grandchamp, A.; Bornberg-Bauer, E.: How antisense transcripts can evolve to encode novel proteins. Nature Communications 15 (1), 6187 (2024)

Lebherz, K.; Iyengar, B.; Bornberg-Bauer, E.: Modeling Length Changes in De Novo Open Reading Frames during Neutral Evolution. Genome Biology and Evolution 16 (7), evae129 (2024)

Lebherz, M.; Fouks, B.; Schmidt, J.; Bornberg-Bauer, E.; Grandchamp, A.: DNA Transposons Favor De Novo Transcript Emergence Through Enrichment of Transcription Factor Binding Motifs. Genome Biology and Evolution 16 (7), evae134 (2024)

Hertle, E.; Ursinus, A.; Martin, J.: Low-temperature features of the psychrophilic chaperonin from Pseudoalteromonas haloplanktis. Archives of Microbiology 206 (7), 299 (2024)

Makova, K.; Pickett, B.; Harris, G.; Hartley, R.; Cechova, M.; Pal, K.; Nurk, S.; Yoo, D.; Li, Q.; Hebbar, P. et al.; McGrath, B.; Antonacci, F.; Aubel, M.; Biddanda, A.; Borchers, M.; Bornberg-Bauer, E.; Bouffard, G.; Brooks, S.; Carbone, L.; Carrel, L.; Carroll, A.; Chang, P.-C.; Chin, C.-S.; Cook, D.; Craig, S.; de Gennaro, L.; Diekhans, M.; Dutra, A.; Garcia, P.; Grady, P.; Green, R.; Haddad, D.; Hallast, P.; Harvey, W.; Hickey, G.; Hillis, D.; Hoyt , S.; Jeong, H.; Kamali, K.; Kosakovsky Pond, S.; LaPolice, T.; Lee, C.; Lewis, A.; Loh, Y.-H.; Masterson, P.; McGarvey, K.; McCoy, R.; Medvedev, P.; Miga, K.; Munson , K.; Pak, E.; Paten, B.; Pinto, B.; Potapova, T.; Rhie, A.; Rocha, J.; Ryabov, F.; Ryder, O.; Sacco, S.; Shafin, K.; Shepelev, V.; Slon, V.; Solar, S.; Storer, J.; Sudmant, P.; Sweetalana; Sweeten, A.; Tassia, M.; Thibaud-Nissen, F.; Ventura, M.; Wilson, M.; Young, A.; Zeng, A.; Zhang, X.; Szpiech, Z.; Huber, C.; Gerton, J.; Yi, S.; Schatz, M.; Alexandrov, I.; Koren, S.; O'Neill, R.; Eichler, E.; Phillippy, A.: The complete sequence and comparative analysis of ape sex chromosomes. Nature 630 (8016), pp. 401 - 411 (2024)

Selim, K.; Alva, V.: PII-like signaling proteins: a new paradigm in orchestrating cellular homeostasis. Current Opinion in Microbiology 79, 102453 (2024)