Publications
_{Protein Evolution}

Ammelburg, M.; Hartmann, M.; Djuranovic, S.; Alva, V.; Koretke, K.; Martin, J.; Sauer, G.; Truffault, V.; Zeth, K.; Lupas, A. et al.; Coles, M.: A CTP-dependent archaeal riboflavin kinase forms a bridge in the evolution of cradle-loop barrels. Structure 15 (12), pp. 1577 - 1590 (2007)

Grosskinsky, U.; Schütz, M.; Fritz, M.; Schmid, Y.; Lamparter, M.; Szczesny, P.; Lupas, A.; Autenrieth, I.; Linke, D.: A conserved glycine residue of trimeric autotransporter domains plays a key role in Yersinia adhesin A autotransport. Journal of Bacteriology 189 (24), pp. 9011 - 9019 (2007)

Tritschler, F.; Eulalio, A.; Truffault, V.; Hartmann, M.; Helms, S.; Schmidt, S.; Coles, M.; Izaurralde, E.; Weichenrieder, O.: A divergent Sm fold in EDC3 proteins mediates DCP1 binding and P-body targeting. Molecular and Cellular Biology (Washington, DC) 27 (24), pp. 8600 - 8611 (2007)

Arnold, T.; Linke, D.: Phase separation in the isolation and purification of membrane proteins. Biotechniques 43 (4), pp. 427 - 430 (2007)

Braun, V.; Herrmann, C.: Docking of the periplasmic FecB binding protein to the FecCD transmembrane proteins in the ferric citrate transport system of Escherichia coli. Journal of Bacteriology 189 (19), pp. 6913 - 6918 (2007)

Schmidt, O.; Schuenemann, V.; Hand, N.; Silhavy, T.; Martin, J.; Lupas, A.; Djuranovic, S.: prlF and yhaV encode a new toxin-antitoxin system in Escherichia coli. Journal of Molecular Biology 372 (4), pp. 894 - 905 (2007)

Wollmann, P.; Zeth, K.: The structure of RseB: A sensor in periplasmic stress response of E-coli. Journal of Molecular Biology 372 (4), pp. 927 - 941 (2007)

Gerlach, R.; Jäckel, D.; Stecher, B.; Wagner, C.; Lupas, A.; Hardt, W.-D.; Hensel, M.: Salmonella Pathogenicity Island 4 encodes a giant non-fimbrial adhesin and the cognate type 1 secretion system. Cellular Microbiology 9 (7), pp. 1834 - 1850 (2007)

Kraemer, J.; Fischer, J.; Zientz, E.; Vijayan, V.; Griesinger, C.; Lupas, A.; Unden, G.: Citrate sensing by the C₄-dicarboxylate/citrate sensor kinase DcuS of Escherichia coli: Binding site and conversion of DcuS to a C₄-dicarboxylate- or citrate-specific sensor. Journal of Bacteriology 189 (11), pp. 4290 - 4298 (2007)

Habeck, M.: Bayesian Reconstruction of the Density of States. Physical Review Letters 98 (20), 200601 (2007)

Hsiao, N.-H.; Söding, J.; Linke, D.; Lange, C.; Hertweck, C.; Wohlleben, W.; Takano, E.: ScbA from Streptomyces coelicolor A3(2) has homology to fatty acid synthases and is able to synthesize γ-butyrolactones. Microbiology 153 (5), pp. 1394 - 1404 (2007)

Hulko, M.; Lupas, A.; Martin, J.: Inherent chaperone-like activity of aspartic proteases reveals a distant evolutionary relation to double-psi barrel domains of AAA-ATPases. Protein Science 16 (4), pp. 644 - 653 (2007)

Alva, V.; Ammelburg, M.; Söding, J.; Lupas, A.: On the origin of the histone fold. BMC Structural Biology 7, 17 (2007)

Arnold, T.; Poynor, M.; Nussberger, S.; Lupas, A.; Linke, D.: Gene duplication of the eight-stranded beta-barrel OmpX produces a functional pore: a scenario for the evolution of transmembrane beta-barrels. Journal of Molecular Biology 366 (4), pp. 1174 - 1184 (2007)

Elbs, M.; Hulko, M.; Frauenfeld, J.; Fischer, R.; Brock, R.: Multivalence and spot heterogeneity in microarray-based measurement of binding constants. Analytical and Bioanalytical Chemistry 387 (6), pp. 2017 - 2025 (2007)

Karpenahalli, M.; Lupas, A.; Söding, J.: TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences. BMC Bioinformatics 8, 2 (2007)

Riess, T.; Raddatz, G.; Linke, D.; Schäfer, A.; Kempf, V.: Analysis of Bartonella Adhesin A Expression Reveals Differences between Various B. henselae Strains. Infection and Immunity 75 (1), pp. 35 - 43 (2007)

Söding, J.: Protein structure and function prediction by pairwise comparison of hidden Markov models. In: Forschung und wissenschaftliches Rechnen: Beiträge zum Heinz-Billing-Preis 2006, pp. 51 - 68 (Eds. Kremer, K.; Macho, V.). Gesellschaft für wissenschaftliche Datenverarbeitung mbH, Göttingen, Germany (2007)

Tritschler, F.; Truffault, V.; Eulalio, A.; Hartmann, M.; Coles, M.; Helms, S.; Schmidt, S.; Izaurralde, E.; Weichenrieder, O.: The N-terminal domain of EDC3 adopts a divergent Sm fold required for P-body localization. In GBM Fall Meeting 2007. GBM Fall Meeting 2007, Hamburg, Germany, September 01, 2007. (2007)

Fischer, J.; Lupas, A.; Söding, J.: A Novel Conservation Score For Functional Residue Prediction. In Automated Function Prediction: Biosapiens Joint Special Interest Group Meeting, p. 67. Automated Function Prediction: Biosapiens Joint Special Interest Group Meeting, Wien, Austria, July 19, 2007 - July 20, 2007. (2007)