Publications of C Becker

Contreras-Garrido, A.; Galanti, D.; Movilli, A.; Becker, C.; Bossdorf, O.; Drost, H.-G.; Weigel, D.: Transposon dynamics in the emerging oilseed crop Thlaspi arvense. PLOS Genetics 20 (1), e1011141 (2024)

Monroe, J.; Srikant, T.; Carbonell-Bejerano, P.; Becker, C.; Lensink, M.; Exposito-Alonso, M.; Klein, M.; Hildebrandt, J.; Neumann, M.; Kliebenstein, D. et al.; Weng, M.-L.; Imbert, E.; Ågren, J.; Rutter, M.; Fenster, C.; Weigel, D.: Author Correction: Mutation bias reflects natural selection in Arabidopsis thaliana. Nature 620 (7973), p. E13 (2023)

Monroe, J.; Murray, K.; Xian, W.; Srikant, T.; Carbonell-Bejerano, P.; Becker, C.; Lensink, M.; Exposito Alonso, M.; Klein, M.; Hildebrandt, J. et al.; Neumann, M.; Kliebenstein, D.; Weng, M.-E.; Imbert, L.; Ågren, J.; Rutter, M.; Fenster, C.; Weigel, D.: Reply to: Re-evaluating evidence for adaptive mutation rate variation. Nature 619 (7971), pp. E57 - E60 (2023)

Wibowo, A.; Antunez-Sanchez, J.; Dawson, A.; Price, J.; Meehan, C.; Wrightsman, T.; Collenberg, M.; Bezrukov, I.; Becker, C.; Benhamed, M. et al.; Weigel, D.; Gutierrez-Marcos, J.: Predictable and stable epimutations induced during clonal plant propagation with embryonic transcription factor. PLoS Genetics 18 (11), e1010479 (2022)

Hüther, P.; Hagmann, J.; Nunn, A.; Kakoulidou, I.; Pisupati, R.; Langenberger, D.; Weigel, D.; Johannes, F.; Schultheiss, S.; Becker, C.: MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data. Quantitative Plant Biology 3, e19 (2022)

Monroe, J.; Srikant, T.; Carbonell-Bejerano, P.; Becker, C.; Lensink, M.; Exposito-Alonso, M.; Klein, M.; Hildebrandt, J.; Neumann, M.; Kliebenstein, D. et al.; Weng, M.-L.; Imbert, E.; Ågren, J.; Rutter, M.; Fenster, C.; Weigel, D.: Mutation bias reflects natural selection in Arabidopsis thaliana. Nature 602 (7895), pp. 101 - 105 (2022)

Hüther, P.; Schandry, N.; Jandrasits, K.; Bezrukov, I.; Becker, C.: ARADEEPOPSIS, an Automated Workflow for Top-View Plant Phenomics using Semantic Segmentation of Leaf States. The Plant Cell 32 (12), pp. 3674 - 3688 (2020)

Weng, M.-L.; Becker, C.; Hildebrandt, J.; Neumann, M.; Rutter, M.; Shaw, R.; Weigel, D.; Fenster, C.: Fine-Grained Analysis of Spontaneous Mutation Spectrum and Frequency in Arabidopsis thaliana. Genetics 211 (2), pp. 703 - 714 (2019)

Tedeschi, F.; Rizzo, P.; Huong, B.; Czihal, A.; Rutten, T.; Altschmied, L.; Scharfenberg, S.; Grosse, I.; Becker, C.; Weigel, D. et al.; Bäumlein, H.; Kuhlmann, M.: EFFECTOR OF TRANSCRIPTION factors are novel plant-specific regulators associated with genomic DNA methylation in Arabidopsis. New Phytologist 221 (1), pp. 261 - 278 (2019)

Wibowo, A.; Becker, C.; Durr, J.; Price, J.; Spaepen, S.; Hilton, S.; Putra, H.; Papareddy, R.; Saintain, Q.; Harvey, S. et al.; Bending, G.; Schulze-Lefert, P.; Weigel, D.; Gutierrez-Marcos, J.: Partial maintenance of organ-specific epigenetic marks during plant asexual reproduction leads to heritable phenotypic variation. Proceedings of the National Academy of Sciences of the United States of America 115 (39), pp. E9145 - E9152 (2018)

Exposito-Alonso, M.; Becker, C.; Schuenemann, V.; Reiter, E.; Setzer, C.; Slovak, R.; Brachi, B.; Hagmann, J.; Grimm, D.; Chen, J. et al.; Busch, W.; Bergelson, J.; Ness, R.; Krause, J.; Burbano, H.; Weigel, D.: The rate and potential relevance of new mutations in a colonizing plant lineage. PLoS Genetics 14 (2), e1007155 (2018)

Stein, J.; Yu, Y.; Copetti, D.; Zwickl, D.; Zhang, L.; Zhang, C.; Chougule, K.; Gao, D.; Iwata, A.; Goicoechea, J. et al.; Wei, S.; Wang, J.; Liao, Y.; Wang, M.; Jacquemin, J.; Becker, C.; Kudrna, D.; Zhang, J.; Londono, C.; Song, X.; Lee, S.; Sanchez, P.; Zuccolo, A.; Ammiraju, J.; Talag, J.; Danowitz, A.; Rivera, L.; Gschwend, A.; Noutsos, C.; Wu, C.; Kao, S.; Zeng, J.; Wei, F.; Zhao, Q.; Feng, Q.; El Baidouri, M.; Carpentier, M.; Lasserre, E.; Cooke, R.; Rosa Farias, D.; da Maia, L.; Dos Santos, R.; Nyberg, K.; McNally, K.; Mauleon, R.; Alexandrov, N.; Schmutz, J.; Flowers, D.; Fan, C.; Weigel, D.; Jena, K.; Wicker, T.; Chen, M.; Han, B.; Henry, R.; Hsing, Y.; Kurata, N.; de Oliveira, A.; Panaud, O.; Jackson, S.; Machado, C.; Sanderson, M.; Long, M.; Ware, D.; Wing, R.: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics 50 (2), pp. 285 - 296 (2018)

Stein, J.; Yu, Y.; Copetti, D.; Zwickl, D.; Zhang, L.; Zhang, C.; Chougule, K.; Gao, D.; Iwata, A.; Goicoechea, J. et al.; Wei, S.; Wang, J.; Liao, Y.; Wang, M.; Jacquemin, J.; Becker, C.; Kudrna, D.; Zhang, J.; Londono, C.; Song, X.; Lee, S.; Sanchez, P.; Zuccolo, A.; Ammiraju, J.; Talag, J.; Danowitz, A.; Rivera, L.; Gschwend, A.; Noutsos, C.; Wu, C.; Kao, S.; Zeng, J.; Wei, F.; Zhao, Q.; Feng, Q.; El Baidouri, M.; Carpentier, M.; Lasserre, E.; Cooke, R.; Rosa Farias, D.; da Maia, L.; Dos Santos, R.; Nyberg, K.; McNally, K.; Mauleon, R.; Alexandrov, N.; Schmutz, J.; Flowers, D.; Fan, C.; Weigel, D.; Jena, K.; Wicker, T.; Chen, M.; Han, B.; Henry, R.; Hsing, Y.; Kurata, N.; de Oliveira, A.; Panaud, O.; Jackson, S.; Machado, C.; Sanderson, M.; Long, M.; Ware, D.; Wing, R.: Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics 50 (11), p. 1618 (2018)

Zhu, W.; Hu, B.; Becker, C.; Doğan, E.; Berendzen, K.; Weigel, D.; Liu, C.: Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid. Genome Biology 18, 157 (2017)

Daccord, N.; Celton, J.-M.; Linsmith, G.; Becker, C.; Choisne, N.; Schijlen, E.; van de Geest, H.; Bianco, L.; Micheletti, D.; Velasco, R. et al.; Di Pierro, E.; Gouzy, J.; Rees, D.; Guerif, P.; Muranty, H.; Durel, C.-E.; Laurens, F.; Lespinasse, Y.; Gaillard, S.; Aubourg, S.; Quesneville, H.; Weigel, D.; van de Weg, E.; Troggio, M.; Bucher, E.: High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. Nature Genetics 49 (7), pp. 1099 - 1106 (2017)

Seymour, D.; Becker, C.: The causes and consequences of DNA methylome variation in plants. Current Opinion in Plant Biology 36, pp. 56 - 63 (2017)

Catoni, M.; Griffiths, J.; Becker, C.; Zabet, N.; Bayon, C.; Dapp, M.; Lieberman-Lazarovich, M.; Weigel, D.; Paszkowski, J.: DNA sequence properties that predict susceptibility to epiallelic switching. EMBO Journal 36 (5), pp. 617 - 628 (2017)

Ikeda, Y.; Pelissier, T.; Bourguet, P.; Becker, C.; Pouch-Pelissier, M.-N.; Pogorelcnik, R.; Weingartner, M.; Weigel, D.; Deragon, J.-M.; Mathieu, O.: Arabidopsis proteins with a transposon-related domain act in gene silencing. Nature Communications 8, 15122 (2017)

Possart, A.; Xu, T.; Paik, I.; Hanke, S.; Keim, S.; Hermann, H.-M.; Wolf, L.; Hiss, M.; Becker, C.; Huq, E. et al.; Rensing, S.; Hiltbrunner, A.: Characterization of Phytochrome Interacting Factors from the Moss Physcomitrella patens Illustrates Conservation of Phytochrome Signaling Modules in Land Plants. Plant Cell 29 (2), pp. 310 - 330 (2017)

Hagmann, J.; Becker, C.: Assessing Distribution and Variation of Genome-Wide DNA Methylation Using Short-Read Sequencing. Methods in Molecular Biology 1610 (2017)