Publications of I Bezrukov

Du, K.; Deusch, O.; Bezrukov, I.; Lanz, C.; Guiguen, Y.; Hoffmann, M.; Habring, A.; Weigel, D.; Schartl, M.; Dreyer, C.: Identification of the male-specific region on the guppy Y Chromosome from a haplotype-resolved assembly. Genome Research Epub ahead (2025)

Xian, W.; Bezrukov, I.; Bao, Z.; Vorbrugg, S.; Gautam, A.; Weigel, D.: TIPPo: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with High-Fidelity Data. Molecular Biology and Evolution 42 (1), msae247 (2025)

Vorbrugg, S.; Bezrukov, I.; Bao, Z.; Weigel, D.: Gretl: Variation GRaph Evaluation TooLkit. Bioinformatics 41 (1), btae755 (2024)

Barragan, A.; Collenberg, M.; Schwab, R.; Kersten, S.; Kerstens, M.; Požárová, D.; Bezrukov, I.; Bemm, F.; Kolár, F.; Weigel, D.: Deleterious Phenotypes in Wild Arabidopsis arenosa Populations Are Common and Linked to Runs of Homozygosity. G3: Genes, Genomes, Genetics 14 (3), jkad290 (2024)

Duque-Jaramillo, A.; Ulmer, N.; Alseekh, S.; Bezrukov, I.; Fernie, A.; Skirycz, A.; Karasov, T.; Weigel, D.: The genetic and physiological basis of Arabidopsis thaliana tolerance to Pseudomonas viridiflava. New Phytologist 240 (5), pp. 1961 - 1975 (2023)

Yuan, W.; Beitel, F.; Srikant, T.; Bezrukov, I.; Schäfer, S.; Kraft, R.; Weigel, D.: Pervasive Under-Dominance in Gene Expression Underlying Emergent Growth Trajectories in Arabidopsis thaliana Hybrids. Genome Biology: Biology for the Post-Genomic Era 24 (1), 200 (2023)

Lundberg, D.; de Pedro Jové, R.; Ayutthaya, P.; Karasov, T.; Shalev, O.; Poersch, K.; Ding, W.; Bollmann-Giolai, A.; Bezrukov, I.; Weigel, D.: Contrasting patterns of microbial dominance in the Arabidopsis thaliana phyllosphere. Proceedings of the National Academy of Sciences of the United States of America 119 (52), e2211881119 (2022)

Wibowo, A.; Antunez-Sanchez, J.; Dawson, A.; Price, J.; Meehan, C.; Wrightsman, T.; Collenberg, M.; Bezrukov, I.; Becker, C.; Benhamed, M. et al.; Weigel, D.; Gutierrez-Marcos, J.: Predictable and stable epimutations induced during clonal plant propagation with embryonic transcription factor. PLoS Genetics 18 (11), e1010479 (2022)

Hüther, P.; Schandry, N.; Jandrasits, K.; Bezrukov, I.; Becker, C.: ARADEEPOPSIS, an Automated Workflow for Top-View Plant Phenomics using Semantic Segmentation of Leaf States. The Plant Cell 32 (12), pp. 3674 - 3688 (2020)

Barragan, C.; Wu, R.; Kim, S.-T.; Xi, W.; Habring, A.; Hagmann, J.; Van de Weyer, A.-L.; Zaidem, M.; Ho, W.; Wang, G. et al.; Bezrukov, I.; Weigel, D.; Chae, E.: RPW8/HR repeats control NLR activation in Arabidopsis thaliana. PLoS Genetics 15 (7), e1008313 (2019)

Capovilla, G.; Delhomme, N.; Collani, S.; Shutava, I.; Bezrukov, I.; Symeonidi, E.; de Francisco Amorim, M.; Laubinger, S.; Schmid, M.: PORCUPINE regulates development in response to temperature through alternative splicing. Nature Plants 4 (8), pp. 534 - 539 (2018)

Disselhorst, J.; Krueger, M.; Ud-Dean, S.; Bezrukov, I.; Jarboui, M.; Trautwein, C.; Traube, A.; Spindler, C.; Cotton, J.; Leibfritz, D. et al.; Pichler, B.: Linking imaging to omics utilizing image-guided tissue extraction. Proceedings of the National Academy of Sciences of the United States of America 115 (13), pp. E2980 - E2987 (2018)

Seith, F.; Schmidt, H.; Gatidis, S.; Bezrukov, I.; Schraml, C.; Pfannenberg, C.; Fougere la, C.; Nikolaou, K.; Schwenzer, N.: SUV-quantification of physiological lung tissue in an integrated PET/MR-system: Impact of lung density and bone tissue. PLoS One 12 (5), e0177856 (2017)

Hofmann, M.; Bezrukov, I.; Mantlik, F.; Aschoff, B.; Steinke, F.; Beyer, T.; Pichler, B.; Schölkopf, B.: MRI-Based Attenuation Correction for Whole-Body PET/MRI: Quantitative Evaluation of Segmentation- and Atlas-Based Methods. Journal of Nuclear Medicine 52 (9), pp. 1392 - 1399 (2011)

Carbonell-Bejerano, P.; Royo, C.; Ferradás, Y.; Rodríguez-Lorenzo, M.; Alañón, N.; Bezrukov, I.; Lanz, C.; Ibáñez, J.; Weigel, D.; Martínez-Zapater, J.: Identificación de variación clonal funcional en Tempranillo y Garnacha mediante el uso de ensamblajes de genomas de referencia varietales. In: Acta de Horticultura, Vol. 91, pp. 12 - 15. IV Jornadas del Grupo de Viticultura de la SECH 2022, Pamplona, Spain, October 26, 2022 - October 28, 2022. Sociedad Española de Ciencias Hortícolas (2022)

Carbonell-Bejerano, P.; Ferradás, Y.; Royo, C.; Bezrukov, I.; Lanz, C.; Mauri, N.; Alba-Elías, F.; Motilva, M.-J.; Weigel, D.; Martínez-Zapater, J.: A large chimeric deletion associates with impairement of cuticle development in a dark berry somatic variant of Tempranillo Tinto. In Julius-Kühn-Archiv, 470, p. 65. XIII. International Symposium on Grapevine Breeding and Genetics, Pioneering Wines (PIWIs): Innovation and Tradition, Landau/Pfalz, Germany, July 10, 2022 - July 15, 2022. Julius Kühn-Institut, Quedlinburg, Germany (2022)

Carbonell-Bejerano, P.; Bezrukov, I.; Alañón, N.; Royo, C.; Mauri, M.; Ferradás, Y.; Lanz, C.; Ibáñez, J.; Martínez-Zapater, J.; Weigel, D.: Clonal improvement-associated somatic mutations identified from diploid genome assembly in Tempranillo grapevine cultivar. In XIth Symposium on Grapevine Physiology and Biotechnology (ISGPB 2021), L44, p. 66. XIth Symposium on Grapevine Physiology and Biotechnology (ISGPB 2021), Stellenbosch, South Africa, October 31, 2021 - November 05, 2021. (2021)

Carbonell-Bejerano, P.; Lanz, C.; Bezrukov, I.; Royo, C.; Mauri, N.; Ferradas, Y.; Ibáñez Marcos, J.; Martínez-Zapater, J.; Weigel, D.: Phased genome assembly to track clonal improvement in Tempranillo grapevine cultivar. In XV Reunión de Biología Molecular de Plantas 2020, SVI-O2, p. 242. XV Reunión de Biología Molecular de Plantas 2020, November 26, 2020 - November 27, 2020. (2020)

Vasiljevic, B.; Lutz, U.; Bezrukov, I.; Weigel, D.: The Evolutionary Genomics of Herbicide-Resistant Weeds. In Sixtieth Meeting of the Weed Science Society of America (WSSA 2020), 312. Sixtieth Meeting of the Weed Science Society of America (WSSA 2020), Maui, HI, USA, March 02, 2020 - March 05, 2020. (2020)

Bezrukov, I.: Managing data at a small-sized sequencing facility. Future Opportunities for Software in Research 2022, Plön, Germany (2022)