Publications of A Contreras

Mencia, R.; Arce, A.; Houriet, C.; Xian, W.; Contreras, A.; Shirsekar, G.; Weigel, D.; Manavella, P.: Transposon-triggered epigenetic chromatin dynamics modulate EFR-related pathogen response. Nature Structural & Molecular Biology 32 (1), pp. 199 - 211 (2025)

Contreras-Garrido, A.; Galanti, D.; Movilli, A.; Becker, C.; Bossdorf, O.; Drost, H.-G.; Weigel, D.: Transposon dynamics in the emerging oilseed crop Thlaspi arvense. PLOS Genetics 20 (1), e1011141 (2024)

Srikant, T.; Yuan, W.; Berendzen, K.; Contreras Garrido, A.; Drost, H.-G.; Schwab, R.; Weigel, D.: Canalization of genome-wide transcriptional activity in Arabidopsis thaliana accessions by MET1-dependent CG methylation. Genome Biology 23 (1), 263 (2022)

Teasdale, L.; Shirsekar, G.; Collenberg, M.; Murray, K.; Contreras-Garrido, A.; Schlegel, T.; van Ess, L.; Juettner, j.; Lanz, C.; Deusch, O. et al.; Fitz, J.; Mencia, R.; Velthoven, R.; Drost, H.-G.; Weigel, D.: Birth, Death, and Persistence in NLR Diversity in the Arabidopsis Immune System. In 12th International Congress of Plant Pathology (ICPP 2023), P5.5-010, p. 385. 12th International Congress of Plant Pathology (ICPP 2023), Lyon, France, August 20, 2023 - August 25, 2023. (2023)

Teasdale, L.; Shirsekar, G.; Collenberg, M.; Murray, K.; Contreras Garrido, A.; van Ess, L.; Juettner, j.; Lanz, C.; Fitz, J.; Drost, H.-G. et al.; Weigel, D.: Challenges of annotating complex genes in the Arabidopsis long read genome collection. In 33rd International Conference on Arabidopsis Research (ICAR 2023), WS02-06. 33rd International Conference on Arabidopsis Research (ICAR 2023), Chiba, Japan, June 05, 2023 - June 06, 2023. (2023)

Contreras, A.; Galanti, D.; Zhang, P.; Nunn, A.; Bossdorf, O.; Weigel, D.: The epigenome of the Brassicaceae Thlaspi arvense. In Conference EpiDiverse 2021, S.2.6, p. 12. Conference EpiDiverse 2021, Sevilla, Spain, September 29, 2021 - October 01, 2021. (2021)

Contreras-Garrido, A.; Zhang, P.; Nunn, A.; Weigel, D.: The Epigenome of the Brassicaceae Thlaspi arvense. In 1st International Student Conference on Biotechnology and Life Science (INSCOBIOL), p. 10. 1st International Student Conference on Biotechnology and Life Science (INSCOBIOL), Surabaya, Indonesia, June 21, 2021. (2021)

Contreras, A.: Transposable element polymorphisms in the potential crop Thlaspi arvense. Distinguished Speaker Seminar Series: Max-Planck-Institute for Biology, Tübingen, Germany (2022)

Sushko, S.; Contreras-Garrido, A.; Drost, H.-G.; Weigel, D.: LTRpred2: De novo annotation of intact LTR-retrotransposons across the Eukaryotic Tree of Life. International Congress on Transposable Elements (ICTE 2024), Saint Malo, France (2024)

Contreras, A.: The epigenomic impact of transposable elements in natural populations. Dissertation, Eberhard-Karls-Universität, Tübingen, Germany (2024)

Teasdale, L.; Murray, K.; Collenberg, M.; Contreras-Garrido, A.; Schlegel, T.; van Ess, L.; Jüttner, J.; Lanz, C.; Deusch, O.; Fitz, J. et al.; Mencia, R.; van Velthoven, R.; Drost, H.-G.; Weigel, D.; Shirsekar, G.: Pangenomic context reveals the extent of intraspecic plant NLR evolution. (submitted)