Publications of G Shirsekar

Mencia, R.; Arce, A.; Houriet, C.; Xian, W.; Contreras, A.; Shirsekar, G.; Weigel, D.; Manavella, P.: Transposon-triggered epigenetic chromatin dynamics modulate EFR-related pathogen response. Nature Structural & Molecular Biology 32 (1), pp. 199 - 211 (2025)

Karasov, T.; Neumann, M.; Leventhal, L.; Symeonidi, E.; Shirsekar, G.; Hawks, A.; Monroe, G.; Pathodopsis Team; Exposito-Alonso, M.; Borgelsen, J. et al.; Weigel, D.; Schwab, R.: Continental-scale associations of Arabidopsis thaliana phyllosphere members with host genotype and drought. Nature Microbiology 9 (10), pp. 2748 - 2758 (2024)

Tao, Y.; Xian, W.; Bao, Z.; Rabanal, F.; Movilli, A.; Lanz, C.; Shirsekar, G.; Weigel, D.: Atlas of telomeric repeat diversity in Arabidopsis thaliana. Genome Biology: Biology for the Post-Genomic Era 25 (1), 244 (2024)

Wlodzimierz, P.; Rabanal, F.; Burns, R.; Naish, M.; Primetis, E.; Scott, A.; Mandáková, T.; Gorringe, N.; Tock, A.; Holland, D. et al.; Fritschi, K.; Habring, A.; Lanz, C.; Patel, C.; Schlegel, T.; Collenberg, M.; Mielke, M.; Nordborg, M.; Roux, F.; Shirsekar, G.; Alonso-Blanco, C.; Lysak, M.; Novikova, P.; Bousios, A.; Weigel, D.; Henderson, I.: Cycles of satellite and transposon evolution in Arabidopsis centromeres. Nature 618 (7965), pp. 557 - 565 (2023)

Shirsekar, G.; Devos, J.; Latorre, S.; Blaha, A.; Queiroz Dias, M.; González Hernando, A.; Lundberg, D.; Burbano, H.; Fenster, C.; Weigel, D.: Multiple Sources of Introduction of North American Arabidopsis thaliana from across Eurasia. Molecular Biology and Evolution 38 (12), pp. 5328 - 5344 (2021)

Vogt, F.; Shirsekar, G.; Weigel, D.: vcf2gwas: python API for comprehensive GWAS analysis using GEMMA. Bioinformatics 38 (3), pp. 839 - 840 (2021)

Lundberg, D.; Ayutthaya, P.; Strauß, A.; Shirsekar, G.; Lo, W.-S.; Lahaye, T.; Weigel, D.: Host-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition. eLife 10, e66186 (2021)

Karasov, T.; Shirsekar, G.; Schwab, R.; Weigel, D.: What natural variation can teach us about resistance durability. Current Opinion in Plant Biology 56, pp. 89 - 98 (2020)

Regalado, J.; Lundberg, D.; Deusch, O.; Kersten, S.; Karasov, T.; Poersch, K.; Shirsekar, G.; Weigel, D.: Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe-microbe interaction networks in plant leaves. The ISME Journal 14 (8), pp. 2116 - 2130 (2020)

Weiß, C.; Schünemann, V.; Devos, J.; Shirsekar, G.; Reiter, E.; Gould, B.; Stinchcombe, J.; Krause, J.; Burbano, H.: Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens. Royal Society Open Science 3 (6), 160239 (2016)

Bao, Z.; Rabanal, F.; Guarracino, A.; Vorbrugg, S.; Xian, W.; Movilli, A.; Teasdale, L.; Murray, K.; Shirsekar, G.; Tao, Y. et al.; Lucke, M.; Garrison, E.; Weigel, D.: Understanding mutational processes from Arabidopsis pangeome graphs. In 34th International Conference on Arabidopsis Research (ICAR 2024), C12-2, p. 156. 34th International Conference on Arabidopsis Research (ICAR 2024), San Diego, CA, USA, July 15, 2024 - July 19, 2024. (2024)

Murray, K.; Shirsekar, G.; Paul, F.; González-Hernando, A.; Schwab, R.; Tahtsidou, C.; Deusch, O.; Dürr, H.; Kontos, I.; Karawounopoulos, S. et al.; Velthoven, R.; Lanz, C.; Collenberg, M.; The Pathodopsis Team; Weigel, D.: The Coevolutionary race between Hyaloperonospora Arabidopsidis and Arabidopsis Thaliana at a Transcontinental Scale. In 12th International Congress of Plant Pathology (ICPP 2023), C2.3-2, pp. 813 - 814. 12th International Congress of Plant Pathology (ICPP 2023), Lyon, France, August 20, 2023 - August 25, 2023. (2023)

Teasdale, L.; Shirsekar, G.; Collenberg, M.; Murray, K.; Contreras-Garrido, A.; Schlegel, T.; van Ess, L.; Juettner, j.; Lanz, C.; Deusch, O. et al.; Fitz, J.; Mencia, R.; Velthoven, R.; Drost, H.-G.; Weigel, D.: Birth, Death, and Persistence in NLR Diversity in the Arabidopsis Immune System. In 12th International Congress of Plant Pathology (ICPP 2023), P5.5-010, p. 385. 12th International Congress of Plant Pathology (ICPP 2023), Lyon, France, August 20, 2023 - August 25, 2023. (2023)

Murray, K.; Shirsekar, G.; Paul, F.; González Hernando, A.; Schwab, R.; Tahtsidou, C.; Deusch, O.; Dürr, H.; Kontos, I.; Marotz, A. et al.; Karawounopoulos, S.; Velthoven, R.; Lucke, M.; Lanz, C.; Collenberg, M.; Pathodopsis Team; Weigel, D.: The coevolutionary race between Hyaloperonospora arabidopsidis and Arabidopsis thaliana at a transcontinental scale. In SMBE 2023, p. 161. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, July 23, 2023 - July 27, 2023. (2023)

Henderson, I.; Wlodzimierz, P.; Rabanal, F.; Burns, R.; Naish, M.; Primetis, E.; Scott, A.; Mandakova, T.; Gorringe, N.; Tock, A. et al.; Collenberg, M.; Mielke, M.; Shirsekar, G.; Alonso-Blanco, C.; Roux, F.; Lysak, M.; Novikov, P.; Nordborg, M.; Bousios, A.; Weigel, D.: Rapid cycles of satellite homogenization and retrotransposon invasion drive Arabidopsis pancentromere evolution. In 33rd International Conference on Arabidopsis Research (ICAR 2023), WS02-01. 33rd International Conference on Arabidopsis Research (ICAR 2023), Chiba, Japan, June 05, 2023 - June 06, 2023. (2023)

Teasdale, L.; Shirsekar, G.; Collenberg, M.; Murray, K.; Contreras Garrido, A.; van Ess, L.; Juettner, j.; Lanz, C.; Fitz, J.; Drost, H.-G. et al.; Weigel, D.: Challenges of annotating complex genes in the Arabidopsis long read genome collection. In 33rd International Conference on Arabidopsis Research (ICAR 2023), WS02-06. 33rd International Conference on Arabidopsis Research (ICAR 2023), Chiba, Japan, June 05, 2023 - June 06, 2023. (2023)

Shirsekar, G.; Murray, K.; Paul, F.; Schwab, R.; Tahtsidou, C.; Velthoven, R.; Deusch, O.; Teasdale, L.; Collenberg, M.; Pathodopsis Team et al.; Weigel, D.: Entangled co-evolutionary history of Hyaloperonospora arabidopsidis and its host Arabidopsis thaliana. In 21st Annual Meeting of the Oomycete Molecular Genetics Network (OMGN 2022), 7.1, p. 35. 21st Annual Meeting of the Oomycete Molecular Genetics Network (OMGN 2022), Brno, Czech Republic, August 22, 2022 - August 25, 2022. (2022)

Karasov, T.; Neumann, M.; Shirsekar, G.; Monroe, G.; Schwab, R.; Weigel, D.: Host and Environmental Drivers of Phyllosphere Composition across Europe. In Harnessing the Plant Microbiome: Virtual Conference, p. 36. Harnessing the Plant Microbiome: Virtual Conference (HPM21), October 22, 2021 - October 24, 2021. (2021)

Lundberg, D.; Ayutthaya, P.; Strauß, A.; Shirsekar, G.; Lo, W.-S.; Lahaye, T.; Weigel, D.: Host-associated microbe PCR (hamPCR): accessing new biology through convenient measurement of both microbial load and community composition. In 1st International Student Conference on Biotechnology and Life Science (INSCOBIOL), p. 9. 1st International Student Conference on Biotechnology and Life Science (INSCOBIOL), Surabaya, Indonesia, June 21, 2021. (2021)

Bai, P.; Park, C.; Shirsekar, G.; Songkumarn, P.; Bellizzi, M.; Wang, G.: Role of lysine residues of the Magnaporthe oryzae effector AvrPiz-t in effector and PAMP-triggered immunity. In APS Annual Meeting 2017, 66-O. APS Annual Meeting 2017, San Antonio, TX, USA, August 05, 2017 - August 09, 2017. (2017)