Publications of M Collenberg

Barragan, A.; Collenberg, M.; Schwab, R.; Kersten, S.; Kerstens, M.; Požárová, D.; Bezrukov, I.; Bemm, F.; Kolár, F.; Weigel, D.: Deleterious Phenotypes in Wild Arabidopsis arenosa Populations Are Common and Linked to Runs of Homozygosity. G3: Genes, Genomes, Genetics 14 (3), jkad290 (2024)

Wlodzimierz, P.; Rabanal, F.; Burns, R.; Naish, M.; Primetis, E.; Scott, A.; Mandáková, T.; Gorringe, N.; Tock, A.; Holland, D. et al.; Fritschi, K.; Habring, A.; Lanz, C.; Patel, C.; Schlegel, T.; Collenberg, M.; Mielke, M.; Nordborg, M.; Roux, F.; Shirsekar, G.; Alonso-Blanco, C.; Lysak, M.; Novikova, P.; Bousios, A.; Weigel, D.; Henderson, I.: Cycles of satellite and transposon evolution in Arabidopsis centromeres. Nature 618 (7965), pp. 557 - 565 (2023)

Wibowo, A.; Antunez-Sanchez, J.; Dawson, A.; Price, J.; Meehan, C.; Wrightsman, T.; Collenberg, M.; Bezrukov, I.; Becker, C.; Benhamed, M. et al.; Weigel, D.; Gutierrez-Marcos, J.: Predictable and stable epimutations induced during clonal plant propagation with embryonic transcription factor. PLoS Genetics 18 (11), e1010479 (2022)

Röseler, W.; Collenberg, M.; Yoshida, K.; Lanz, C.; Sommer, R.; Rödelsperger, C.: The improved genome of the nematode Parapristionchus giblindavisi provides insights into lineage-specific gene family evolution. G3: Genes, Genomes, Genetics 12 (10), jkac215 (2022)

Barragan, A.; Collenberg, M.; Wang, J.; Lee, R.; Cher, W.; Rabanal, F.; Ashkenazy, H.; Weigel, D.; Chae, E.: A Truncated Singleton NLR Causes Hybrid Necrosis in Arabidopsis thaliana. Molecular Biology and Evolution 38 (2), pp. 557 - 574 (2021)

Lucke, M.; Ashkenazy, H.; Teasdale, L.; Paul, F.; Collenberg, M.; Schlegel, T.; Schwab, R.; Weigel, D.: On the relationship between alleles of the immune receptor RPP1 and its oomycete effector ligand ATR1. In 34th International Conference on Arabidopsis Research (ICAR 2024), P9-6, p. 580. 34th International Conference on Arabidopsis Research (ICAR 2024), San Diego, CA, USA, July 15, 2024 - July 19, 2024. (2024)

Murray, K.; Shirsekar, G.; Paul, F.; González-Hernando, A.; Schwab, R.; Tahtsidou, C.; Deusch, O.; Dürr, H.; Kontos, I.; Karawounopoulos, S. et al.; Velthoven, R.; Lanz, C.; Collenberg, M.; The Pathodopsis Team; Weigel, D.: The Coevolutionary race between Hyaloperonospora Arabidopsidis and Arabidopsis Thaliana at a Transcontinental Scale. In 12th International Congress of Plant Pathology (ICPP 2023), C2.3-2, pp. 813 - 814. 12th International Congress of Plant Pathology (ICPP 2023), Lyon, France, August 20, 2023 - August 25, 2023. (2023)

Teasdale, L.; Shirsekar, G.; Collenberg, M.; Murray, K.; Contreras-Garrido, A.; Schlegel, T.; van Ess, L.; Juettner, j.; Lanz, C.; Deusch, O. et al.; Fitz, J.; Mencia, R.; Velthoven, R.; Drost, H.-G.; Weigel, D.: Birth, Death, and Persistence in NLR Diversity in the Arabidopsis Immune System. In 12th International Congress of Plant Pathology (ICPP 2023), P5.5-010, p. 385. 12th International Congress of Plant Pathology (ICPP 2023), Lyon, France, August 20, 2023 - August 25, 2023. (2023)

Murray, K.; Shirsekar, G.; Paul, F.; González Hernando, A.; Schwab, R.; Tahtsidou, C.; Deusch, O.; Dürr, H.; Kontos, I.; Marotz, A. et al.; Karawounopoulos, S.; Velthoven, R.; Lucke, M.; Lanz, C.; Collenberg, M.; Pathodopsis Team; Weigel, D.: The coevolutionary race between Hyaloperonospora arabidopsidis and Arabidopsis thaliana at a transcontinental scale. In SMBE 2023, p. 161. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, July 23, 2023 - July 27, 2023. (2023)

Henderson, I.; Wlodzimierz, P.; Rabanal, F.; Burns, R.; Naish, M.; Primetis, E.; Scott, A.; Mandakova, T.; Gorringe, N.; Tock, A. et al.; Collenberg, M.; Mielke, M.; Shirsekar, G.; Alonso-Blanco, C.; Roux, F.; Lysak, M.; Novikov, P.; Nordborg, M.; Bousios, A.; Weigel, D.: Rapid cycles of satellite homogenization and retrotransposon invasion drive Arabidopsis pancentromere evolution. In 33rd International Conference on Arabidopsis Research (ICAR 2023), WS02-01. 33rd International Conference on Arabidopsis Research (ICAR 2023), Chiba, Japan, June 05, 2023 - June 06, 2023. (2023)

Teasdale, L.; Shirsekar, G.; Collenberg, M.; Murray, K.; Contreras Garrido, A.; van Ess, L.; Juettner, j.; Lanz, C.; Fitz, J.; Drost, H.-G. et al.; Weigel, D.: Challenges of annotating complex genes in the Arabidopsis long read genome collection. In 33rd International Conference on Arabidopsis Research (ICAR 2023), WS02-06. 33rd International Conference on Arabidopsis Research (ICAR 2023), Chiba, Japan, June 05, 2023 - June 06, 2023. (2023)

Shirsekar, G.; Murray, K.; Paul, F.; Schwab, R.; Tahtsidou, C.; Velthoven, R.; Deusch, O.; Teasdale, L.; Collenberg, M.; Pathodopsis Team et al.; Weigel, D.: Entangled co-evolutionary history of Hyaloperonospora arabidopsidis and its host Arabidopsis thaliana. In 21st Annual Meeting of the Oomycete Molecular Genetics Network (OMGN 2022), 7.1, p. 35. 21st Annual Meeting of the Oomycete Molecular Genetics Network (OMGN 2022), Brno, Czech Republic, August 22, 2022 - August 25, 2022. (2022)

Lucke, M.; Ashkenazy, H.; Teasdale, L.; Paul, F.; Collenberg, M.; Schlegel, T.; Shirsekar, G.; Schwab, R.; Weigel, D.: On the relationship between alleles of the immune receptor RPP1 and its oomycete effector ligand ATR1. Congress of the International Society for Molecular Plant-Microbe Interactions (IS-MPMI 2023), Providence, RI, USA (2024)

Lucke, M.; Shirsekar, G.; Paul, F.; Collenberg, M.; Schlegel, T.; Schwab, R.; Weigel, D.: Linking resistance and effector genes in the Arabidopsis-Hyaloperonospora pathosystem. 32nd International Conference on Arabidopsis Research (ICAR 2022), Belfast, Ireland (2022)

Collenberg, M.; Bemm, F.; Weigel, D.: Transcriptome Analysis in Hybrid Plants using Platinum Genomes. German Conference on Bioinformatics (GCB 2017), Tübingen, Germany (2017)

Collenberg, M.: Arabidopsis thaliana genome assemblies and their use in hybrid transcriptome analyses. Dissertation, 195 pp., Eberhard-Karls-Universität, Tübingen, Germany (2023)

Teasdale, L.; Murray, K.; Collenberg, M.; Contreras-Garrido, A.; Schlegel, T.; van Ess, L.; Jüttner, J.; Lanz, C.; Deusch, O.; Fitz, J. et al.; Mencia, R.; van Velthoven, R.; Drost, H.-G.; Weigel, D.; Shirsekar, G.: Pangenomic context reveals the extent of intraspecic plant NLR evolution. (submitted)

Igolkina, A.; Vorbrugg, S.; Rabanal, F.; Liu, H.-J.; Ashkenazy, H.; Kornienko, A.; Fitz, J.; Collenberg, M.; Kubica, C.; Mollá Morales, A. et al.; Jaegle, B.; Wrightsman, T.; Voloshin, V.; Llaca, V.; Nizhynska, V.; Reichardt, I.; Lanz, C.; Bemm, F.; Flood, B.; Nemomissa, S.; Hancock, A.; Guo, Y.-L.; Kersey, P.; Weigel, D.; Nordborg, M.: Towards an unbiased characterization of genetic polymorphism. (submitted)