Publications of S Vorbrugg

Xian, W.; Bezrukov, I.; Bao, Z.; Vorbrugg, S.; Gautam, A.; Weigel, D.: TIPPo: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with High-Fidelity Data. Molecular Biology and Evolution 42 (1), msae247 (2025)

Vorbrugg, S.; Bezrukov, I.; Bao, Z.; Weigel, D.: Gretl: Variation GRaph Evaluation TooLkit. Bioinformatics 41 (1), btae755 (2024)

Garrison, E.; Guarracino, A.; Heumos, S.; Villani, F.; Bao, Z.; Tattini, T.; Hagmann, J.; Vorbrugg, S.; Marco-Sola, S.; Kubica, C. et al.; Ashbrook, G.; Thorell, K.; Rusholme-Pilcher, R.; Liti, G.; Rudbeck, E.; Golicz, A.; Nahnsen, S.; Yang, Z.; Mwaniki, M.; Nobrega, F.; Wu, Y.; Chen, H.; de Ligt, J.; Sudmant, P.; Huang, S.; Weigel, D.; Soranzo, N.; Colonna, V.; Williams, R.; Prins, P.: Building pangenome graphs. Nature Methods 21 (11), pp. 2008 - 2012 (2024)

Bao, Z.; Rabanal, F.; Guarracino, A.; Vorbrugg, S.; Xian, W.; Movilli, A.; Teasdale, L.; Murray, K.; Shirsekar, G.; Tao, Y. et al.; Lucke, M.; Garrison, E.; Weigel, D.: Understanding mutational processes from Arabidopsis pangeome graphs. In 34th International Conference on Arabidopsis Research (ICAR 2024), C12-2, p. 156. 34th International Conference on Arabidopsis Research (ICAR 2024), San Diego, CA, USA, July 15, 2024 - July 19, 2024. (2024)

Bao, Z.; Vorbrugg, S.; Huang, S.; Weigel, D.: Benchmarking graph building pipeline on plant genome assemblies. In 33rd International Conference on Arabidopsis Research (ICAR 2023), WS02-05. 33rd International Conference on Arabidopsis Research (ICAR 2023), Chiba, Japan, June 05, 2023 - June 06, 2023. (2023)

Vorbrugg, S.: Effect of reference genome choice on variant calling. Master, 78 pp., Eberhard-Karls-Universität, Tübingen, Germany (2019)

Xian, W.; Bao, Z.; Vorbrugg, S.; Tao, Y.; Movilli, A.; Bezrukov, I.; Weigel, D.: The structure of mitochondrial genomes is associated with geography in Arabidopsis thaliana. (submitted)

The 1001 Genomes Plus Consortium; Alonso-Blanco, C.; Ashkenazy, H.; Baduel, P.; Bao, Z.; Becker, C.; Caillieux, E.; Colot, V.; Crosbie, D.; De Oliveira, L. et al.; Fitz, J.; Fritschi, K.; Grigoreva, E.; Guo, Y.; Habring, A.; Henderson, I.; Hou, X.-H.; Hu, Y.; Igolkina, A.; Kang, M.; Kemen, E.; Kersey, P.; Kornienko, A.; Lian, Q.; Liu, H.; Liu, J.; Lucke, M.; Mayjonade, B.; Mercier, R.; Mollá Morales, A.; Movilli, A.; Murray, K.; Naish, M.; Nordborg, M.; Rabanal, F.; Roux, F.; Schandry, N.; Schneeberger, K.; Schwab, R.; Shirsekar, G.; Sushko, S.; Tao, Y.; Teasdale, L.; Vorbrugg, S.; Weigel, D.; Xian, W.: The 1001G+ project: A curated collection of Arabidopsis thaliana long-read genome assemblies to advance plant research. (submitted)

Vorbrugg, S.; Bezrukov, I.; Bao, Z.; Xian, W.; Weigel, D.: Gfa2bin enables graph-based GWAS by converting genome graphs to pan-genomic genotypes. (submitted)

Xian, W.; Bezrukov, I.; Bao, Z.; Vorbrugg, S.; Gautam, A.; Weigel, D.: TIPP_plastid: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with HiFi Data. (submitted)

Igolkina, A.; Vorbrugg, S.; Rabanal, F.; Liu, H.-J.; Ashkenazy, H.; Kornienko, A.; Fitz, J.; Collenberg, M.; Kubica, C.; Mollá Morales, A. et al.; Jaegle, B.; Wrightsman, T.; Voloshin, V.; Llaca, V.; Nizhynska, V.; Reichardt, I.; Lanz, C.; Bemm, F.; Flood, B.; Nemomissa, S.; Hancock, A.; Guo, Y.-L.; Kersey, P.; Weigel, D.; Nordborg, M.: Towards an unbiased characterization of genetic polymorphism. (submitted)