Publications of S Ossowski

Chae, E.; Bomblies, K.; Kim, S.-T.; Karelina, D.; Zaidem, M.; Ossowski, S.; Martín-Pizarro, C.; Laitinen, R.; Rowan, B.; Tenenboim, H. et al.; Lechner, S.; Demar, M.; Habring-Müller, A.; Lanz, C.; Rätsch, G.; Weigel, D.: Species-wide Genetic Incompatibility Analysis Identifies Immune Genes as Hot Spots of Deleterious Epistasis. Cell 159 (6), pp. 1341 - 1351 (2014)

Wijnker, E.; James, G.; Ding, J.; Becker, F.; Klasen, J.; Rawat, V.; Rowan, B.; de Jong, D.; de Snoo, C.; Zapata, L. et al.; Huettel, B.; de Jong, H.; Ossowski, S.; Weigel, D.; Koornneef, M.; Keurentjes, J.; Schneeberger, K.: The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana. eLife 2, e01426 (2013)

Hauser, F.; Chen, W.; Deinlein, U.; Chang, K.; Ossowski, S.; Fitz, J.; Hannon, G.; Schroeder, J.: A genomic-scale artificial microRNA library as a tool to investigate the functionally redundant gene space in Arabidopsis. Plant Cell 25 (8), pp. 2848 - 2863 (2013)

Koenig, D.; Jimenez-Gomez, J.; Kimura, S.; Fulop, D.; Chitwood, D.; Headland, L.; Kumar, R.; Covington, M.; Devisetty, U.; Tat, A. et al.; Tohge, T.; Bolger, A.; Schneeberger, K.; Ossowski, S.; Lanz, C.; Xiong, G.; Taylor-Teeples, M.; Brady, S.; Pauly, M.; Weigel, D.; Usadel, B.; Fernie, A.; Peng, J.; Sinha, N.; Maloof, J.: Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proceedings of the National Academy of Sciences of the United States of America 110 (28), pp. E2655 - E2662 (2013)

Kopischke, M.; Westphal, L.; Schneeberger, K.; Clark, R.; Ossowski, S.; Wewer, V.; Fuchs, R.; Landtag, J.; Hause, G.; Doermann, P. et al.; Lipka, V.; Weigel, D.; Schulze-Lefert, P.; Scheel, D.; Rosahl, S.: Impaired sterol ester synthesis alters the response of Arabidopsis thaliana to Phytophthora infestans. The Plant Journal 73 (3), pp. 456 - 468 (2013)

Sorge, S.; Ha, N.; Polychronidou, M.; Friedrich, J.; Bezdan, D.; Kaspar, P.; Schaefer, M.; Ossowski, S.; Henz, S.; Mundorf, J. et al.; Rätzer, J.; Papagiannouli, F.; Lohmann, I.: The cis-regulatory code of Hox function in Drosophila. The EMBO Journal 31 (15), pp. 3323 - 3333 (2012)

Rutter, M.; Roles, A.; Conner, J.; Shaw, R.; Shaw, F.; Schneeberger, K.; Ossowski, S.; Weigel, D.; Fenster, C.: Fitness of Arabidopsis thaliana mutation accumulation lines whose spontaneous mutations are known. Evolution: international journal of organic evolution 66 (7), pp. 2335 - 2339 (2012)

Cao, J.; Schneeberger, K.; Ossowski, S.; Günther, T.; Bender, S.; Fitz, J.; König, D.; Lanz, C.; Stegle, O.; Lippert, C. et al.; Wang, X.; Ott, F.; Müller, J.; Alonso-Blanco, C.; Borgwardt, K.; Schmid, K.; Weigel, D.: Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nature Genetics 43 (10), pp. 956 - 963 (2011)

Guo, Y.-L.; Fitz, J.; Schneeberger, K.; Ossowski, S.; Cao, J.; Weigel, D.: Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiology 157 (2), pp. 757 - 769 (2011)

Klein, J.; Ossowski, S.; Schneeberger, K.; Weigel, D.; Huson, D.: LOCAS: A Low Coverage Assembly Tool for Resequencing Projects. PLOS ONE 6 (8), e23455 (2011)

Schneeberger, K.; Ossowski, S.; Ott, F.; Klein, J.; Wang, X.; Lanz, C.; Smith, L.; Cao, J.; Fitz, J.; Warthmann, N. et al.; Henz, S.; Huson, D.; Weigel, D.: Reference-guided assembly of four diverse Arabidopsis thaliana genomes. Proceedings of the National Academy of Sciences of the United States of America 108 (25), pp. 10249 - 10254 (2011)

Hu, T.; Pattyn, P.; Bakker, E.; Cao, J.; Cheng, J.-F.; Clark, R.; Fahlgren, N.; Fawcett, J.; Grimwood, J.; Gundlach, A. et al.; Haberer, D.; Hollister, J.; Ossowski, S.; Ottilar, R.; Salamov, A.; Schneeberger, K.; Spannagl, M.; Wang, X.; Yang, L.; Nasrallah, M.; Bergelson, J.; Carrington, J.; Gaut, B.; Schmutz, J.; Mayer, K.; Van de Peer, Y.; Grigoriev, I.; Nordborg, M.; Weigel, D.; Guo, Y.-L.: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nature Genetics 43 (5), pp. 476 - 481 (2011)

Laitinen, R.; Schneeberger, K.; Jelly, N.; Ossowski, S.; Weigel, D.: Identification of a spontaneous frame shift mutation in a nonreference Arabidopsis accession using whole genome sequencing. Plant Physiology 153 (2), pp. 652 - 654 (2010)

Khraiwesh, B.; Arif, M.; Seumel, G.; Ossowski, S.; Weigel, D.; Reski, R.; Frank, W.: Transcriptional control of gene expression by microRNAs. Cell 140 (1), pp. 111 - 122 (2010)

Ossowski, S.; Schneeberger, K.; Lucas-Lledó, J.; Warthmann, N.; Clark, R.; Shaw, R.; Weigel, D.; Lynch, M.: The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science 327 (5961), pp. 92 - 94 (2010)

Out, A.; van Minderhout, I.; Goeman, J.; Ariyurek, Y.; Ossowski, S.; Schneeberger, K.; Weigel, D.; van Galen, M.; Taschner, P.; Tops, C. et al.; Breuning, M.; van Ommen, G.-J.; den Dunnen, J.; Devilee, P.; Hes, F.: Deep sequencing to reveal new variants in pooled DNA samples. Human Mutations 30 (12), pp. 1703 - 1712 (2009)

Mirouze, M.; Reinders, J.; Bucher, E.; Nishimura, T.; Schneeberger, K.; Ossowski, S.; Cao, J.; Weigel, D.; Paszkowski, J.; Mathieu, O.: Selective epigenetic control of retrotransposition in Arabidopsis. Nature 461 (7262), pp. 427 - 430 (2009)

Schneeberger, K.; Hagmann, J.; Ossowski, S.; Warthmann, N.; Gesing, S.; Kohlbacher, O.; Weigel, D.: Simultaneous alignment of short reads against multiple genomes. Genome Biology 10 (9), R98 (2009)

Schneeberger, K.; Ossowski, S.; Lanz, C.; Juul, T.; Petersen, A.; Nielsen, K.; Jørgensen, J.-E.; Weigel, D.; Andersen, S.: SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nature Methods 6 (8), pp. 550 - 551 (2009)

Molnar, A.; Bassett, A.; Thuenemann, E.; Schwach, F.; Karkare, S.; Ossowski, S.; Weigel, D.; Baulcombe, D.: Highly specific gene silencing by artificial microRNAs in the unicellular alga Chlamydomonas reinhardtii. The Plant Journal 58 (1), pp. 165 - 174 (2009)