Publications of E Netz

Netz, E.; Dijkstra, T.; Sachsenberg, T.; Zimmermann, L.; Walzer, M.; Monecke, T.; Ficner, R.; Dybkiv, O.; Urlaub, H.; Kohlbacher, O.: OpenPepXL: An open-source tool for sensitive identification of cross-linked peptides in XL-MS. Molecular and Cellular Proteomics 19 (12), pp. 2157 - 2168 (2020)

Leitner, A.; Bonvin, A.; Borchers, C.; Chalkley, R.; Chamot-Rooke, J.; Combe, C.; Cox, J.; Dong, M.-Q.; Fischer, L.; Götze, M. et al.; Gozzo, F.; Heck, A.; Hoopmann, M.; Huang, L.; Ishihama, Y.; Jones, A.; Kalisman, N.; Kohlbacher, O.; Mechtler, K.; Moritz, R.; Netz, E.; Novak, P.; Petrotchenko, E.; Sali, A.; Scheltema, R.; Schmidt, C.; Schriemer, D.; Sinz, A.; Sobott, F.; Stengel, F.; Thalassinos, K.; Urlaub, H.; Viner, R.; Vizcaíno, J.; Wilkins, M.; Rappsilber, J.: Toward increased reliability, transparency, and accessibility in cross-linking mass spectrometry. Structure 28 (11), pp. 1259 - 1268 (2020)

Zou, X.; Conrad, L.; Koschinsky, K.; Schlichthörl, G.; Preisig-Müller, R.; Netz, E.; Krüger, J.; Daut, J.; Renigunta, V.: The Phosphodiesterase Inhibitor IBMX Blocks the Potassium Channel THIK-1 from the Extracellular Side. Molecular Pharmacology 98 (2), pp. 143 - 155 (2020)

Vizcaino, J.; Mayer, G.; Perkins, S.; Barsnes, H.; Vaudel, M.; Perez-Riverol, Y.; Ternent, T.; Uszkoreit, J.; Eisenacher, M.; Fischer, L. et al.; Rappsilber, J.; Netz, E.; Walzer, M.; Kohlbacher, O.; Leitner, A.; Chalkley, R.; Ghali, F.; Martinez-Bartolome, S.; Deutsch, E.; Jones, A.: The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics. Molecular and Cellular Proteomics 16 (7), pp. 1275 - 1285 (2017)

Sachsenberg, T.; Stützer, A.; Chernev, A.; Netz, E.; Dijkstra, T.; Urlaub, H.; Kohlbacher, O.: A Novel Computational Approach for Simultaneous Identification of Protein-RNA and Protein-DNA Interactions from XL-MS Data. In 67th ASMS Conference on Mass Spectrometry and Allied Topics. 67th ASMS Conference on Mass Spectrometry and Allied Topics, Atlanta, GA, USA, June 02, 2019 - June 06, 2019. (2019)

Netz, E.; Dijkstra, T.; Sachsenberg, T.; Kohlbacher, O.: OpenPepXL: An open-source tool for sensitive identification of cross-linked peptides in XL-MS. 68th ASMS Conference on Mass Spectrometry and Allied Topics (2020)

Netz, E.; Dijkstra, T.; Sachsenberg, T.; Kohlbacher, O.: OpenPepXL: Sensitive, Comprehensive Identification and Quantification of Protein-Protein Cross-Links. 67th ASMS Conference on Mass Spectrometry and Allied Topics, Atlanta, GA, USA (2019)

Netz, E.; Dijkstra, T.; Kohlbacher, O.: OpenPepXL: a versatile and sensitive XL-MS identification tool. 8th Symposium on Structural Proteomics (8SSP), Berlin, Germany (2018)

Netz, E.; Dijkstra, T.; Kohlbacher, O.: OpenPepXL: a Versatile and Sensitive XL-MS Identification Tool. 66th ASMS Conference on Mass Spectrometry and Allied Topics, San Diego, CA, USA (2018)

Netz, E.: OpenPepXL: a versatile and sensitive XL-MS identification tool. 7th Symposium on Structural Proteomics (7SSP), Wien, Austria (2017)

Netz, E.; Sachsenberg, T.; Gloeckner, C.; Kohlbacher, O.: OpenProXL: a Fast and Versatile XL-MS Identification Tool. 65th ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, USA (2017)