Publications of R Bohnert

Drewe, P.; Stegle, O.; Hartmann, L.; Kahles, A.; Bohnert, R.; Wachter, A.; Borgwardt, K.; Rätsch, G.: Accurate detection of differential RNA processing. Nucleic Acids Research 41 (10), pp. 5189 - 5198 (2013)

Smith, L.; Hartmann, L.; Drewe, P.; Bohnert, R.; Kahles, A.; Lanz, C.; Rätsch, G.: Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes. RNA Biology 9 (5), pp. 596 - 609 (2012)

Gan, X.; Stegle, O.; Behr, J.; Steffen, J.; Drewe, P.; Hildebrand, K.; Lyngsoe , R.; Schultheiss, S.; Osborne, E.; Sreedharan, V. et al.; Kahles, A.; Bohnert, R.; Jean, G.; Derwent, P.; Kersey, P.; Belfield, E.; Harberd, N.; Kemen, F.; Toomajian, C.; Kover , P.; Clark, R.; Rätsch, G.; Mott, R.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 477 (7365), pp. 419 - 423 (2011)

Stegle, O.; Drewe, P.; Bohnert, R.; Borgwardt, K.; Rätsch, G.: Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts. Nature Precedings 2010 (2010)

McNally, K.; Childs, K.; Bohnert, R.; Davidson, R.; Zhao, K.; Ulat, V.; Zeller, G.; Clark, R.; Hoen, T.; Bureau, D. et al.; Stokowski, R.; Ballinger, D.; Frazer, K.; Cox, D.; Padhukasahasram, B.; Bustamante, C.; Weigel, D.; Mackill, D.; Bruskiewich, R.; Rätsch, G.; Buell, C.; Leung, H.; Leach, J.: Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proceedings of the National Academy of Sciences of the United States of America 106 (30), pp. 12273 - 12278 (2009)

Bohnert, R.; Zeller, G.; Clark, R.; Childs, K.; Ulat, V.; Stokowski, R.; Ballinger , D.; Frazer, K.; Cox, D.; Bruskiewich, R. et al.; Buell, C.; Leach, J.; Leung, H.; McNally, K.; Weigel, D.; Rätsch, G.: Revealing sequence variation patterns in rice with machine learning methods. In BMC Bioinformatics, 9 (Supplement 10), O8. Fourth International Society for Computational Biology Student Council Symposium (ISCB 2008) , Toronto, Canada, July 18, 2008. BioMed Central (2008)

Rätsch, G.; Gan, X.; Stegle, O.; Behr, J.; Drewe, P.; Drewe, P.; Steffen, J.; Clark, R.; Osborne, E.; Schultheiss, S. et al.; Sreedharan, V.; Kahles, A.; Bohnert, R.; Jean, G.; Hildebrand, K.; Toomajian, C.; Lyngsoe, R.; Derwent, P.; Kersey, P.; Belfield, E.; Harberd, N.; Kemen, E.; Kover, P.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2012), Long Beach, CA, USA (2012)

Behr, J.; Bohnert, R.; Kahles, A.; Schweikert, G.; Zeller, G.; Hartmann, L.; Rätsch, G.: Accurate RNA-seq based de novo annotation using mGene.ngs. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB 2011), Wien, Austria (2011)

Drewe, P.; Stegle, O.; Bohnert, R.; Borgwardt, K.; Rätsch, G.: Statistical tests for detecting differential RNA-transcript expression. 4th Berlin Summer Meeting: “Computational & Experimental Molecular Biology Meet”, Berlin, Germany (2011)

Stegle, O.; Drewe, P.; Bohnert, R.; Borgwardt, K.; Rätsch, G.: Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts. Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference: Genome Informatics, Hinxton, UK (2010)

Drewe, P.; Stegle, O.; Bohnert, R.; Borgwardt, K.; Rätsch, G.: Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts. 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA (2010)