Publications of N Warthmann

Murray, K.; Borevitz, J.; Weigel, D.; Warthmann, N.: Acanthophis: a comprehensive plant hologenomics pipeline. The Journal of Open Source Software (JOSS) 9 (95), 6062 (2024)

Brockington, S.; Moyroud, E.; Sayou, C.; Monniaux, M.; Nanao, M.; Thevenon, E.; Chahtane, H.; Warthmann, N.; Melkonian, M.; Zhang, Y. et al.; Wong, G.-S.; Weigel, D.; Dumas, R.; Parcy, F.: Evolution: Response to Comment on "A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity". Science 347 (347), p. 621 (2015)

Willing, E.-M.; Rawat, V.; Mandakova, T.; Maumus, F.; James, G.; Nordstroem, K.; Becker, C.; Warthmann, N.; Chica, C.; Szarzynska, B. et al.; Zytnicki, M.; Albani, M.; Kiefer, C.; Bergonzi, S.; Castaings, L.; Mateos, J.; Berns, M.; Bujdoso, N.; Piofczyk, T.; de Lorenzo, L.; Barrero-Sicilia, C.; Mateos, I.; Piednoel, M.; Hagmann, J.; Chen-Min-Tao, R.; Iglesias-Fernandez, R.; Schuster, S.; Alonso-Blanco, C.; Roudier, F.; Carbonero, P.; Paz-Ares, J.; Davis, S.; Pecinka, A.; Quesneville, H.; Colot, V.; Lysak, M.; Weigel, D.; Coupland, G.; Schneeberger, K.: Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nature Plants 1 (2), 14023 (2015)

Sayou, C.; Monniaux, M.; Nanao, M.; Moyroud, E.; Brockington, S.; Thevenon, E.; Chahtane, H.; Warthmann, N.; Melkonian, M.; Zhang, Y. et al.; Wong, G.-S.; Weigel, D.; Parcy, F.; Dumas, R.: A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity. Science 343 (6171), pp. 645 - 648 (2014)

Schneeberger, K.; Ossowski, S.; Ott, F.; Klein, J.; Wang, X.; Lanz, C.; Smith, L.; Cao, J.; Fitz, J.; Warthmann, N. et al.; Henz, S.; Huson, D.; Weigel, D.: Reference-guided assembly of four diverse Arabidopsis thaliana genomes. Proceedings of the National Academy of Sciences of the United States of America 108 (25), pp. 10249 - 10254 (2011)

Strange, A.; Li, P.; Lister, C.; Anderson, J.; Warthmann, N.; Shindo, C.; Irwin, J.; Nordborg, N.; Dean, C.: Major-effect alleles at relatively few loci underlie distinct vernalization and flowering variation in Arabidopsis accessions. PLOS ONE 6 (5), e19949 (2011)

Bomblies, K.; Yant, L.; Laitinen, R.; Kim, S.-T.; Hollister, J.; Warthmann, N.; Fitz, J.; Weigel, D.: Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana. PLoS Genetics 6 (3), e1000890 (2010)

Platt, A.; Horton, M.; Huang, Y.; Li, Y.; Anastasio, A.; Mulyati, N.; Agren, J.; Bossdorf, O.; Byers, D.; Donohue, K. et al.; Dunning, M.; Holub, E.; Hudson, A.; Le Corre, V.; Loudet, O.; Roux, F.; Warthmann, N.; Weigel, D.; Rivero, L.; Scholl, R.; Nordborg, M.; Bergelson, J.; Borevitz, J.: The scale of population structure in Arabidopsis thaliana. PLoS Genetics 6 (2), e1000843 (2010)

Ossowski, S.; Schneeberger, K.; Lucas-Lledó, J.; Warthmann, N.; Clark, R.; Shaw, R.; Weigel, D.; Lynch, M.: The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science 327 (5961), pp. 92 - 94 (2010)

Schwartz, C.; Balasubramanian, S.; Warthmann, N.; Todd, P.; Lempe, J.; Sureshkumar, S.; Kobayashi, Y.; Maloof, J.; Borevitz, J.; Chory, J. et al.; Weigel, D.: Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. Genetics 183 (2), pp. 723 - 732 (2009)

Schneeberger, K.; Hagmann, J.; Ossowski, S.; Warthmann, N.; Gesing, S.; Kohlbacher, O.; Weigel, D.: Simultaneous alignment of short reads against multiple genomes. Genome Biology 10 (9), R98 (2009)

Balasubramanian, S.; Schwartz, C.; Singh, A.; Warthmann, N.; Kim, M.; Maloof, J.; Loudet, O.; Trainer, G.; Dabi, T.; Borevitz, J. et al.; Chory, J.; Weigel, D.: QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines. PLoS One 4 (2), e4318 (2009)

Ossowski, S.; Schneeberger, K.; Clark, R.; Lanz, C.; Warthmann, N.; Weigel, D.: Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Research 18 (12), pp. 2024 - 2033 (2008)

Warthmann, N.; Das, S.; Lanz, C.; Weigel, D.: Comparative analysis of the MIR319a microRNA locus in Arabidopsis and related Brassicaceae. Molecular Biology and Evolution 25 (5), pp. 892 - 902 (2008)

Warthmann, N.; Chen, H.; Ossowski, S.; Weigel, D.; Hervé, P.: Highly specific gene silencing by artificial miRNAs in rice. PLoS One 3 (3), e1829 (2008)

Warthmann, N.; Fitz, J.; Weigel, D.: MSQT for choosing SNP assays from multiple DNA alignments. Bioinformatics 23 (20), pp. 2784 - 2787 (2007)

Bomblies, K.; Lempe, J.; Epple, P.; Warthmann, N.; Lanz, C.; Dangl, J.; Weigel, D.: Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants. PLoS Biology 5 (9), e236 (2007)

Dreyer, C.; Hoffmann, M.; Lanz, C.; Willing, E.-M.; Riester, M.; Warthmann, N.; Sprecher, A.; Tripathi, N.; Henz, S.; Weigel, D.: ESTs and EST-linked polymorphisms for genetic mapping and phylogenetic reconstruction in the guppy, Poecilia reticulata. BMC Genomics 8, 269 (2007)

Clark, R.; Schweikert, G.; Toomajian, C.; Ossowski, S.; Zeller, G.; Shinn, P.; Warthmann, N.; Hu, T.; Fu, G.; Hinds, D. et al.; Chen, H.; Frazer, K.; Huson, D.; Schölkopf, B.; Nordborg, M.; Rätsch, G.; Ecker, J.; Weigel, D.: Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana. Science 317 (5836), pp. 338 - 342 (2007)

Palatnik, J.; Wollmann, H.; Schommer, C.; Schwab, R.; Boisbouvier, J.; Rodriguez, R.; Warthmann, N.; Allen, E.; Dezulian, T.; Huson, D. et al.; Carrington , J.; Weigel, D.: Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319. Developmental Cell 13 (1), pp. 115 - 125 (2007)