Publications of O Kohlbacher

Barquera, R.; Del Castillo-Chávez, O.; Nägele, K.; Pérez-Ramallo, P.; Hernández-Zaragoza, D.; Szolek, A.; Rohrlach, A.; Librado, P.; Childebayeva, A.; Bianco, R. et al.; Penman, B.; Acuña-Alonzo, V.; Lucas, M.; Lara-Riegos, J.; Moo-Mezeta, M.; Torres-Romero, J.; Roberts, P.; Kohlbacher, O.; Warinner, C.; Krause, J.: Ancient genomes reveal insights into ritual life at Chichén Itzá. Nature 630 (8018), pp. 912 - 919 (2024)

Röhl, A.; Netz, E.; Kohlbacher, O.; Elhabashy, H.: CLAUDIO: Automated structural analysis of cross-linking data. Bioinformatics 40 (4), btae146 (2024)

Schönecker, S.; Hoffmann, V.; Albashiti, F.; Thasler, R.; Hagedorn, M.; Louiset, M.-L.; Kopczak, A.; Rösler, J.; Baki, E.; Wunderlich, S. et al.; Kohlmayer, F.; Kuhn, K.; Boeker, M.; Tünnerhoff, J.; Poli, S.; Ziemann, U.; Kohlbacher, O.; Althaus, K.; Müller, S.; Ludolph, A.; Kestler, H.; Mansmann, U.; Dieterich, M.; Kellert, L.: PREDICT-juvenile-stroke: PRospective evaluation of a prediction score determining individual clinical outcome three months after ischemic stroke in young adults - a study protocol. BMC Neurology 23 (1), 2 (2023)

Singh, J.; Elhabashy, H.; Muthukottiappan, P.; Stepath, M.; Eisenacher, M.; Kohlbacher, O.; Gieselmann, V.; Winter, D.: Cross-linking of the endolysosomal system reveals potential flotillin structures and cargo. Nature Communications 13 (1), 6212 (2022)

Blum, C.; Baur, D.; Achauer, L.-C.; Berens, P.; Biergans, S.; Erb, M.; Hömberg, V.; Huang, Z.; Kohlbacher, O.; Liepert, J. et al.; Lindig, T.; Lohmann, G.; Macke, J.; Römhild, J.; Rösinger-Hein, C.; Zrenner, B.; Ziemann, U.: Personalized neurorehabilitative precision medicine: from data to therapies (MWKNeuroReha) - a multi-centre prospective observational clinical trial to predict long-term outcome of patients with acute motor stroke. BMC Neurology 22 (1), 238 (2022)

Childebayeva, A.; Rohrlach, A.; Barquera, R.; Rivollat, M.; Aron, F.; Szolek, A.; Kohlbacher, O.; Nicklisch, N.; Alt, K.; Gronenborn, D. et al.; Meller, H.; Friederich, S.; Prüfer, K.; Deguilloux, M.-F.; Krause, J.; Haak, W.: Population Genetics and Signatures of Selection in Early Neolithic European Farmers. Molecular Biology and Evolution 39 (6), msac108 (2022)

Elhabashy, H.; Merino, F.; Alva, V.; Kohlbacher, O.; Lupas, A.: Exploring protein-protein interactions at the proteome level. Structure 30 (4), pp. 462 - 475 (2022)

Winkler, S.; Winkler, I.; Figaschewski, M.; Tiede, T.; Nordheim, A.; Kohlbacher, O.: De novo identification of maximally deregulated subnetworks based on multi-omics data with DeRegNet. BMC Bioinformatics 23 (1), 139 (2022)

Agkün, M.; Pfeifer, N.; Kohlbacher, O.: Efficient Privacy-preserving Whole-Genome Variant Queries. Bioinformatics 38 (8), btac070, pp. 2202 - 2210 (2022)

Kubiniok, P.; Marcu, A.; Bichmann, L.; Kuchenbecker, L.; Schuster, H.; Hamelin, D.; Duquette, J.; Kovalchik, K.; Wessling, L.; Kohlbacher, O. et al.; Rammensee, H.-G.; Neidert, M.; Sirois, I.; Caron, E.: Understanding the constitutive presentation of MHC class I immunopeptidomes in primary tissues. iScience 25 (2), 103768 (2022)

Immel, A.; Key, F.; Szolek, A.; Barquera, R.; Robinson, M.; Harrison, G.; Palmer, W.; Spyrou, M.; Susat, J.; Krause-Kyora, B. et al.; Bos, K.; Forrest, S.; Hernández-Zaragoza, D.; Sauter, J.; Solloch, U.; Schmidt, A.; Schünemann, V.; Reiter, E.; Kairies, M.; Weiß, R.; Arnold, S.; Wahl, J.; Hollenbach, J.; Kohlbacher, O.; Herbig, A.; Norman, P.; Krause, J.: Analysis of genomic DNA from medieval plague victims suggests long-term effect of Yersinia pestis on human immunity genes. Molecular Biology and Evolution 38 (10), pp. 4059 - 4079 (2021)

Kittner, M.; Lamping, M.; Rieke, D.; Götze, J.; Bajwa, B.; Jelas, I.; Rüter, G.; Hautow, H.; Sänger, M.; Habibi, M. et al.; Zettwitz, M.; de Bortoli , T.; Ostermann, L.; Ševa, J.; Starlinger, J.; Kohlbacher, O.; Malek, N.; Keilholz, U.; Leser, U.: Annotation and initial evaluation of a large annotated German oncological corpus. JAMIA Open 4 (2), ooab025 (2021)

Marcu, A.; Bichmann, L.; Kuchenbecker, L.; Kowalewski, D.; Freudenmann, L.; Backert, L.; Mühlenbruch, L.; Szolek, A.; Lübke, M.; Wagner, P. et al.; Engler, T.; Matovina , S.; Wang, J.; Hauri-Hohl, M.; Martin, R.; Kapolou, K.; Walz, J.; Velz, J.; Moch, H.; Regli, L.; Silginer, M.; Weller, M.; Löffler, M.; Erhard, F.; Schlosser, A.; Kohlbacher, O.; Stevanović, S.; Rammensee, H.-G.; Neidert, M.: HLA Ligand Atlas: a benign reference of HLA-presented peptides to improve T-cell-based cancer immunotherapy. Journal for ImmunoTherapy of Cancer 9 (4), e002071 (2021)

Green, A.; Elhabashy, H.; Brock, K.; Maddamsetti, R.; Kohlbacher, O.; Marks, D.: Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences. Nature Communications 12 (1), 1396 (2021)

Akgün, M.; Ünal, A.; Ergüner, B.; Pfeifer, N.; Kohlbacher, O.: Identifying Disease-causing Mutations with Privacy Protection. Bioinformatics 36 (21), pp. 5205 - 5213 (2021)

Bandeira, N.; Deutsch, E.; Kohlbacher, O.; Martens, L.; Vizcaíno, J.: Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future. Molecular and Cellular Proteomics 20, 100071 (2021)

Immel, A.; Pierini, F.; Rinne, C.; Meadows, J.; Barquera, R.; Szolek, A.; Susat, J.; Böhme, L.; Dose, J.; Bonczarowska, J. et al.; Drummer, C.; Fuchs, K.; Ellinghaus, D.; Kässens, J.; Furholt, M.; Kohlbacher, O.; Schade-Lindig, S.; Franke, A.; Krause, J.; Müller, J.; Lenz, J.; Nebel, A.; Krause-Kyora, B.: Genome-wide study of a Neolithic Wartberg grave community reveals distinct HLA variation and hunter-gatherer ancestry. Communications Biology 4 (1), 113 (2021)

Kapsner, L.; Kampf, M.; Seuchter, S.; Gruendner, J.; Gulden, C.; Mate, S.; Mang, J.; Schüttler, C.; Deppenwiese, N.; Krause, L. et al.; Zöller, D.; Balig, J.; Fuchs, T.; Fischer, P.; Havercamp, C.; Holderried, M.; Mayer, G.; Stenzhorn, H.; Stolnicu, A.; Storck, M.; Storf, H.; Zohner, J.; Kohlbacher, O.; Strzelczyk, A.; Schüttler, J.; Acker, T.; Boeker, M.; Kaisers, U.; Kestler, H.; Prokosch, H.-U.: Reduced Rate of Inpatient Hospital Admissions in 18 German University Hospitals During the COVID-19 Lockdown. Frontiers in public health 8, 594117 (2021)

Nelde, A.; Bilich, T.; Heitmann, J.; Maringer, Y.; Salih, H.; Roerden, M.; Luebke, M.; Bauer, J.; Rieth, J.; Wacker, M. et al.; Peter, A.; Hörber, S.; Traenkle, B.; Kaiser, P.; Rothbauer , U.; Becker, M.; Junker, D.; Krause, D.; Strengert, M.; Schneiderhan-Marra , N.; Templin, M.; Joos, T.; Kowalewski, D.; Stos-Zweifel, V.; Fehr, M.; Rabsteyn, A.; Mirakaj, V.; Karbach, J.; Jäger, E.; Graf, M.; Gruber, L.-C.; Rachfalski, D.; Preuß, B.; Hagelstein , I.; Märklin, M.; Bakchoul, T.; Gouttefangeas, C.; Kohlbacher, O.; Klein, R.; Stevanović, S.; Rammensee, H.-G.; Walz, J.: SARS-CoV-2-derived peptides define heterologous and COVID-19-induced T cell recognition. Nature Immunology 22 (1), pp. 74 - 85 (2021)

Klare, J.; Rurik, M.; Rottmann, E.; Bollen, A.; Kohlbacher, O.; Fischer, M.; Hackl, T.: Determination of the Geographical Origin of Asparagus officinalis L. by 1 H NMR Spectroscopy. Journal of Agricultural and Food Chemistry 68 (49), pp. 14353 - 14363 (2020)