Publications of R Clark

Kopischke, M.; Westphal, L.; Schneeberger, K.; Clark, R.; Ossowski, S.; Wewer, V.; Fuchs, R.; Landtag, J.; Hause, G.; Doermann, P. et al.; Lipka, V.; Weigel, D.; Schulze-Lefert, P.; Scheel, D.; Rosahl, S.: Impaired sterol ester synthesis alters the response of Arabidopsis thaliana to Phytophthora infestans. The Plant Journal 73 (3), pp. 456 - 468 (2013)

Grbić, M.; Van Leeuwen, T.; Clark, R.; Rombauts, S.; Rouzé, P.; Grbić, V.; Osborne, E.; Dermauw, W.; Ngoc, P.; Ortego, F. et al.; Hernández-Crespo, P.; Diaz, I.; Martinez, M.; Navajas, M.; Sucena, É.; Magalhães, S.; Nagy, L.; Pace, R.; Djuranovic, S.; Smagghe, G.; Iga, M.; Christiaens, O.; Veenstra, J.; Ewer, J.; Mancilla Villalobos, R.; Hutter, J.; Hudson, S.; Velez, M.; Yi, S.; Zeng, J.; Pires-daSilva, A.; Roch, F.; Cazaux, M.; Navarro, M.; Zhurov, V.; Acevedo, G.; Bjelica, A.; Fawcett, J.; Bonnet, E.; Martens, C.; Baele, G.; Wissler, L.; Sanchez-Rodriguez, A.; Tirry, L.; Blais, C.; Demeestere, K.; Henz, S.; Gregory, T.; Mathieu, J.; Verdon, L.; Farinelli, L.; Schmutz, J.; Lindquist, E.; Feyereisen, R.; Van de Peer, V.: The genome of Tetranychus urticae reveals herbivorous pest adaptations. Nature 479 (7374), pp. 487 - 492 (2011)

Hu, T.; Pattyn, P.; Bakker, E.; Cao, J.; Cheng, J.-F.; Clark, R.; Fahlgren, N.; Fawcett, J.; Grimwood, J.; Gundlach, A. et al.; Haberer, D.; Hollister, J.; Ossowski, S.; Ottilar, R.; Salamov, A.; Schneeberger, K.; Spannagl, M.; Wang, X.; Yang, L.; Nasrallah, M.; Bergelson, J.; Carrington, J.; Gaut, B.; Schmutz, J.; Mayer, K.; Van de Peer, Y.; Grigoriev, I.; Nordborg, M.; Weigel, D.; Guo, Y.-L.: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nature Genetics 43 (5), pp. 476 - 481 (2011)

Ossowski, S.; Schneeberger, K.; Lucas-Lledó, J.; Warthmann, N.; Clark, R.; Shaw, R.; Weigel, D.; Lynch, M.: The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science 327 (5961), pp. 92 - 94 (2010)

Ossowski, S.; Schneeberger, K.; Clark, R.; Lanz, C.; Warthmann, N.; Weigel, D.: Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Research 18 (12), pp. 2024 - 2033 (2008)

Zeller, G.; Clark, R.; Schneeberger, K.; Bohlen, A.; Weigel, D.; Rätsch, G.: Detecting polymorphic regions in Arabidopsis thaliana with resequencing microarrays. Genome Research 18 (6), pp. 918 - 929 (2008)

Kim, S.; Plagnol, V.; Hu, T.; Toomajian, C.; Clark, R.; Ossowski, S.; Ecker, J.; Weigel, D.; Nordborg, M.: Recombination and linkage disequilibrium in Arabidopsis thaliana. Nature Genetics 39 (9), pp. 1151 - 1155 (2007)

Tang, C.; Toomajian, C.; Sherman-Broyles, S.; Plagnol, V.; Guo, Y.-L.; Hu, T.; Clark, R.; Nasrallah, J.; Weigel, D.; Nordborg, M.: The evolution of selfing in Arabidopsis thaliana. Science 317 (5841), pp. 1070 - 1072 (2007)

Clark, R.; Schweikert, G.; Toomajian, C.; Ossowski, S.; Zeller, G.; Shinn, P.; Warthmann, N.; Hu, T.; Fu, G.; Hinds, D. et al.; Chen, H.; Frazer, K.; Huson, D.; Schölkopf, B.; Nordborg, M.; Rätsch, G.; Ecker, J.; Weigel, D.: Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana. Science 317 (5836), pp. 338 - 342 (2007)

Balasubramanian, S.; Sureshkumar, S.; Agrawal, M.; Michael, T.; Wessinger, C.; Maloof, J.; Clark, R.; Warthmann, N.; Chory, J.; Weigel, D.: The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. Nature Genetics 38 (6), pp. 711 - 715 (2006)

Wright, S.; Platts, A.; Haudry, A.; Williamson, R.; Hazzouri, K.; Vello, E.; Forczek, E.; Chantha, S.-C.; Joly, S.; Koenig, D. et al.; Mitchell-Olds, T.; Wing, R.; Weigel, D.; Schumaker, A.; Town, C.; Wang, X.; Schranz, W.; Pires, J.; Clark, R.; Steffen, J.; Toomajian, C.; Prochnik, S.; Jenkins, J.; Schmutz, J.; Rokhsar, D.; Harmsen, E.; Stinchcombe, J.; Harrison, P.; Bureau, T.; Schoen, D.; Moses, A.; Blanchette, M.: Comparative and Population Genomics in the Brassicaceae. In Plant & Animal Genome XX: Workshop Brassicas, W099. Plant & Animal Genome XX: Workshop Brassicas, San Diego, CA, USA, January 14, 2012. (2012)

Bohnert, R.; Zeller, G.; Clark, R.; Childs, K.; Ulat, V.; Stokowski, R.; Ballinger , D.; Frazer, K.; Cox, D.; Bruskiewich, R. et al.; Buell, C.; Leach, J.; Leung, H.; McNally, K.; Weigel, D.; Rätsch, G.: Revealing sequence variation patterns in rice with machine learning methods. In BMC Bioinformatics, 9 (Supplement 10), O8. Fourth International Society for Computational Biology Student Council Symposium (ISCB 2008) , Toronto, Canada, July 18, 2008. BioMed Central (2008)

Balasubramaniam, S.; Sureshkumar, S.; Agrawal, M.; Michael, T.; Wessinger, C.; Maloof, J.; Clark, R.; Warthmann, N.; Chory, J.; Weigel, D.: Common alleles of PHYTOCHROME C mediate natural variation in flowering and growth responses of Arabidopsis thaliana. In 17th International Conference on Arabidopsis Research (ICAR 2006), 29, p. 15. 17th International Conference on Arabidopsis Research (ICAR 2006), Madison, WI, USA, June 28, 2006 - July 02, 2006. (2006)

Guo, Y.-L.; Cheng, J.-F.; Hu, T.; Haberer, G.; Hollister, J.; Pattyn, P.; Clark, R.; Ossowski, S.; Schneeberger, K.; Kim, S.-T. et al.; Cao, J.; Lanz, C.; Otillar, R.; Bergelson, J.; Borevitz, J.; Hall, A.; Langley, C.; Neuffer, B.; Nasrallah, J.; Savolainen, O.; Wright, S.; Grigoriev, I.; Mayer, K.; Schmutz, J.; Van de Peer, Y.; Gaut, B.; Nordborg, M.; Rokshar, D.; Weigel, D.: The Arabidopsis lyrata genome: what can we learn from the close relative of Arabidopsis thaliana. 20th International Conference on Arabidopsis Research (ICAR 2009), Edinburgh, UK (2009)

Poo, C.; Mathieu, J.; Clark, R.; Schmid, M.; Grbic, M.; Grbic, V.: Interactions between Plant and Pest Genomes: Arabidopsis-Two Spotted Spider Mite Tetranychus Urticae Novel Model for Plant-Herbivore Interactions. 19th International Conference on Arabidopsis Research (ICAR 2008), Montreal, Canada (2008)

Vilhjalmsson, B.; Atwell, S.; Willems, G.; Huang, Y.; Jiang, R.; Li, Y.; Zhang, X.; Hu, T.; Clark, R.; Toomaijan, C. et al.; Aranzana, M.; Zhao, K.; Tarone, A.; Lee, R.; Jung, C.; Platt, A.; Lister, C.; Horton, M.; Bergelson, J.; Shindo, C.; Dean, C.; Ecker, J.; Weigel, D.; Borevitz, J.; Marjoram, P.; Nordborg, M.: Genome-Wide Association Mapping in Arabidopsis Thaliana. 19th International Conference on Arabidopsis Research (ICAR 2008), Montreal, Canada (2008)

Guo, Y.-L.; Chen, J.-F.; Clark, R.; Lanz, C.; Schneeberger, K.; Ossowski, S.; Warthmann, N.; Bergelson, J.; Borevitz, J.; Gaut, B. et al.; Hall, A.; Langley, C.; Neuffer, B.; Nasrallah, J.; Mayer, K.; Nordborg, M.; Savolainen, O.; Van de Peer, Y.; Wright, S.; Schmutz, J.; Rokhsar, D.; Weigel, D.: Whole-Genome Sequencing Arabidopsis lyrata and Capsella rubella: Two Close Relatives of A. thaliana. Third Annual DOE Joint Genome Institute User Meeting, Walnut Creek, CA, USA (2008)

Poo, C.; Mathieu, J.; Clark, R.; Schmid, M.; Grbic, M.; Grbic, V.: Whole Genome Sequencing of the Two Spotted Spider Mite Tetranychus urticae: Novel Model for Plant-Herbivore Interactions. Third Annual DOE Joint Genome Institute User Meeting, Walnut Creek, CA, USA (2008)

Zeller, G.; Schweikert, G.; Clark, R.; Ossowski, S.; Warthmann, N.; Shinn, P.; Frazer, K.; Ecker, J.; Huson, D.; Weigel, D. et al.; Schölkopf, B.; Rätsch, G.: Machine Learning Algorithms for Polymorphism Detection. 14th International Conference on Intelligent Systems for Molecular Biology (ISMB 2006), Fortaleza, Brazil (2006)

Clark, R.; Ossowski, S.; Schweikert, G.; Zeller, G.; Shinn , P.; Rätsch, G.; Warthmann, N.; Fu, G.; Hinds, D.; Cheng, H. et al.; Frazer, K.; Toomajian, C.; Hu, T.; Huson, D.; Schölkopf, B.; Nordborg, M.; Ecker, J.; Weigel, D.: An Inventory of Common Sequence Polymorphisms for Arabidopsis. 17th International Conference on Arabidopsis Research (ICAR 2006), Madison, WI, USA (2006)