Publications of W Xian

Mencia, R.; Arce, A.; Houriet, C.; Xian, W.; Contreras, A.; Shirsekar, G.; Weigel, D.; Manavella, P.: Transposon-triggered epigenetic chromatin dynamics modulate EFR-related pathogen response. Nature Structural & Molecular Biology 32 (1), pp. 199 - 211 (2025)

Xian, W.; Bezrukov, I.; Bao, Z.; Vorbrugg, S.; Gautam, A.; Weigel, D.: TIPPo: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with High-Fidelity Data. Molecular Biology and Evolution 42 (1), msae247 (2025)

Liu, T.; Liu, H.; Xian, W.; Liu, Z.; Yuan, Y.; Fan, J.; Xiang, S.; Yang, X.; Liu, Y.; Liu, S. et al.; Zhang, M.; Shen, Y.; Jiao, Y.; Cheng, S.; Doyle, J.; Xie, F.; Li, J.; Tian, Z.: Duplication and sub-functionalization of flavonoid biosynthesis genes plays important role in Leguminosae root nodule symbiosis evolution. Journal of Integrative Plant Biology 66 (10), pp. 2191 - 2207 (2024)

Liu, T.; Liu, Z.; Yuan, Y.; Liu, H.; Xian, W.; Xiang, S.; Yang, X.; Liu, Y.; Liu, S.; Zhang, M. et al.; Jiao, Y.; Cheng, S.; Doyle, J.; Xie, F.; Li, J.; Tian, Z.: Loss of Lateral suppressor gene is associated with evolution of root nodule symbiosis in Leguminosae. Genome Biology: Biology for the Post-Genomic Era 25 (1), 250 (2024)

Tao, Y.; Xian, W.; Bao, Z.; Rabanal, F.; Movilli, A.; Lanz, C.; Shirsekar, G.; Weigel, D.: Atlas of telomeric repeat diversity in Arabidopsis thaliana. Genome Biology: Biology for the Post-Genomic Era 25 (1), 244 (2024)

Cheng, S.; Feng, C.; Wingen, L.; Cheng, H.; Riche, A.; Jiang, M.; Leverington-Waite, M.; Huang, Z.; Collier, S.; Orford, S. et al.; Wang, X.; Awal, R.; Barker, G.; O'Hara , T.; Lister, C.; Siluveru, A.; Quiroz-Chávez, J.; Ramírez-González, R.; Bryant, R.; Berry, S.; Bansal, U.; Bariana, H.; Bennett, M.; Bicego, B.; Bilham, L.; Brown, J.; Burridge, A.; Burt, C.; Buurman, M.; Castle, M.; Chartrain, L.; Chen, B.; Denbel, W.; Elkot, A.; Fenwick , P.; Feuerhelm, D.; Foulkes, J.; Gaju, O.; Gauley, A.; Gaurav, K.; Hafeez, A.; Han, R.; Horler, R.; Hou, J.; Iqbal, M.; Kerton, M.; Kondic-Spica, A.; Kowalski, A.; Lage, J.; Li, X.; Liu, H.; Liu, S.; Lovegrove, A.; Ma, L.; Mumford, C.; Parmar, S.; Philp, C.; Playford, D.; Przewieslik-Allen , A.; Sarfraz, Z.; Schafer, D.; Shewry, P.; Shi, Y.; Slafer, G.; Song, B.; Song, B.; Steele, D.; Steuernagel , B.; Tailby, P.; Tyrrell, S.; Waheed, A.; Wamalwa, M.; Wang, X.; Wei, Y.; Winfield, M.; Wu, S.; Wu, Y.; Wulff, B.; Xian, W.; Xu, Y.; Xu, Y.; Yuan, Q.; Zhang, X.; Edwards, K.; Dixon, L.; Nicholson, P.; Chayut, N.; Hawkesford , M.; Uauy, C.; Sanders, D.; Huang, S.; Griffiths, S.: Harnessing landrace diversity empowers wheat breeding. Nature 632 (8026), pp. 823 - 831 (2024)

Monroe, J.; Murray, K.; Xian, W.; Srikant, T.; Carbonell-Bejerano, P.; Becker, C.; Lensink, M.; Exposito Alonso, M.; Klein, M.; Hildebrandt, J. et al.; Neumann, M.; Kliebenstein, D.; Weng, M.-E.; Imbert, L.; Ågren, J.; Rutter, M.; Fenster, C.; Weigel, D.: Reply to: Re-evaluating evidence for adaptive mutation rate variation. Nature 619 (7971), pp. E57 - E60 (2023)

Bao, Z.; Rabanal, F.; Guarracino, A.; Vorbrugg, S.; Xian, W.; Movilli, A.; Teasdale, L.; Murray, K.; Shirsekar, G.; Tao, Y. et al.; Lucke, M.; Garrison, E.; Weigel, D.: Understanding mutational processes from Arabidopsis pangeome graphs. In 34th International Conference on Arabidopsis Research (ICAR 2024), C12-2, p. 156. 34th International Conference on Arabidopsis Research (ICAR 2024), San Diego, CA, USA, July 15, 2024 - July 19, 2024. (2024)

Xian, W.: Re-visiting the somatic mutation rate in long-lived oak tree. PhD Students’ Symposium 2024, Tübingen, Germany (2024)

Xian, W.; Carbonell-Bejerano, P.; Rabanal, F.; Bezrukov, I.; Reymond, P.; Weigel, D.: Minimizing detection bias of somatic mutations in a highly heterozygous oak genome. (submitted)

Xian, W.; Bao, Z.; Vorbrugg, S.; Tao, Y.; Movilli, A.; Bezrukov, I.; Weigel, D.: The structure of mitochondrial genomes is associated with geography in Arabidopsis thaliana. (submitted)

The 1001 Genomes Plus Consortium; Alonso-Blanco, C.; Ashkenazy, H.; Baduel, P.; Bao, Z.; Becker, C.; Caillieux, E.; Colot, V.; Crosbie, D.; De Oliveira, L. et al.; Fitz, J.; Fritschi, K.; Grigoreva, E.; Guo, Y.; Habring, A.; Henderson, I.; Hou, X.-H.; Hu, Y.; Igolkina, A.; Kang, M.; Kemen, E.; Kersey, P.; Kornienko, A.; Lian, Q.; Liu, H.; Liu, J.; Lucke, M.; Mayjonade, B.; Mercier, R.; Mollá Morales, A.; Movilli, A.; Murray, K.; Naish, M.; Nordborg, M.; Rabanal, F.; Roux, F.; Schandry, N.; Schneeberger, K.; Schwab, R.; Shirsekar, G.; Sushko, S.; Tao, Y.; Teasdale, L.; Vorbrugg, S.; Weigel, D.; Xian, W.: The 1001G+ project: A curated collection of Arabidopsis thaliana long-read genome assemblies to advance plant research. (submitted)

Vorbrugg, S.; Bezrukov, I.; Bao, Z.; Xian, W.; Weigel, D.: Gfa2bin enables graph-based GWAS by converting genome graphs to pan-genomic genotypes. (submitted)

Xian, W.; Bezrukov, I.; Bao, Z.; Vorbrugg, S.; Gautam, A.; Weigel, D.: TIPP_plastid: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with HiFi Data. (submitted)

Monroe, J.; Murray, K.; Xian, W.; Carbonell-Bejerano, P.; Fenster, C.; Weigel, D.: Report of mutation biases mirroring selection in Arabidopsis thaliana unlikely to be entirely due to variant calling errors. (submitted)