Publications of DH Huson

Fenselau de Felippes, F.; Schneeberger, K.; Dezulian, T.; Huson, D.; Weigel, D.: Evolution of Arabidopsis thaliana microRNAs from random sequences. RNA: A Publication of the RNA Society 14 (12), pp. 2455 - 2459 (2008)

Palatnik, J.; Wollmann, H.; Schommer, C.; Schwab, R.; Boisbouvier, J.; Rodriguez, R.; Warthmann, N.; Allen, E.; Dezulian, T.; Huson, D. et al.; Carrington , J.; Weigel, D.: Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319. Developmental Cell 13 (1), pp. 115 - 125 (2007)

Dezulian, T.; Schaefer, M.; Wiese, R.; Weigel, D.; Huson, D.: CrossLink: visualization and exploration of sequence relationships between (micro) RNAs. Nucleic Acids Research (London) 34 (Web Server issue), pp. W400 - W404 (2006)

Dezulian, T.; Remmert, M.; Palatnik, J.; Weigel, D.; Huson, D.: Identification of plant microRNA homologs. Bioinformatics 22 (3), pp. 359 - 360 (2006)

Henz, S.; Huson, D.; Auch, A.; Nieselt-Struwe, K.; Schuster, S.: Whole-genome prokaryotic phylogeny. Bioinformatics 21 (10), pp. 2329 - 2335 (2005)

Eppinger, M.; Baar, C.; Raddatz, G.; Huson, D.; Schuster, S.: Comparative analysis of four Campylobacterales. Nature Reviews Microbiology 2 (11), pp. 872 - 885 (2004)

Bağci, C.; Abrecht, B.; Huson, D.: MAIRA: Protein-based Analysis of MinION Reads on a Laptop. In: Metagenomic Data Analysis, pp. 223 - 234 (Ed. Mitra, S.). Humana Press, NewYork, NY, USA (2023)

Gautam, A.; Zeng, W.; Huson, D.: DIAMOND + MEGAN Microbiome Analysis. In: Metagenomic Data Analysis, pp. 107 - 131 (Ed. Mitra, S.). Humana Press, NewYork, NY, USA (2023)

Bağci, C.; Beier, S.; Górska, A.; Huson, D.: ntroduction to the Analysis of Environmental Sequences: Metagenomics with MEGAN. In: Evolutionary Genomics: Statistical and Computational Methods, pp. 591 - 604. Humana Press, New York, NY, USA (2019)

Huson, D.; Kohlbacher, O.; Lupas, A.; Nieselt, K.; Zell, A. (Eds.): German Conference on Bioinformatics GCB 2006 (Gesellschaft für Informatik: GI-Edition / Proceedings, 83). German Conference on Bioinformatics (GCB 2006), Tübingen, Germany, September 19, 2006 - September 22, 2006. Gesellschaft für Informatik e.V., Bonn, Germany (2006)

Delgado Friedrichs, O.; Halpern, A.; Lippert, R.; Rausch, C.; Schuster, S.; Huson, D.: Syntenic Layout of Two Assemblies of Related Genomes. In: German Conference on Bioinformatics: GCB 2004, P053, pp. 3 - 12 (Eds. Giegerich, R.; Stoye, J.). German Conference on Bioinformatics (GCB 2004), Bielefeld, Germany, October 04, 2004 - October 06, 2004. Gesellschaft für Informatik e.V., Bonn, Germany (2004)

Botta, C.; Tsoureki, D.; Gautam, A.; Patz, S.; Pissaridi, K.; Ferrocino, I.; Franciosa, I.; Cocolin, L.; Huson, D.; Rantsiou, K.: How can DNA-based omics effectively improve microbiological quality control? An explorative study applied to infant food production. In 28th ICFMH International Conference: FoodMicro 2024, 4.4, pp. 62 - 63. 28th ICFMH International Conference: FoodMicro 2024, Burgos, Spain, July 08, 2024 - July 11, 2024. (2024)

Botta, C.; Tsoureki, D.; Gautam, A.; Patz, S.; Pissaridi, K.; Ferrocino, I.; Cocolin, L.; Huson, D.; Rantsiou, K.: The pros and cons of tracking the microbial contamination in infant food processing chain through amplicon sequencing and metagenomics. In Food System Microbiomes 2024, S5-ST03, p. 50. Food System Microbiomes 2024, Torino, Italy, May 14, 2024 - May 17, 2024. (2024)

Patz, S.; Gautam, A.; Becker, M.; Ruppel, S.; Huson, D.: From application of the plant growth-promoting traits ontology towards a sustainable plant production. In Molecular Plant-Microbe Interactions, 32 (3 Supplement), p. 4. 2021 IS-MPMI Congress: Plant–Microbe Interactions in the Environment: Navigating a Complex World, December 01, 2021 - December 02, 2021. APS Press, St. Paul, MN, USA (2021)

Albrecht, B.; Bağci, C.; Huson, D.: MAIRA: real-time taxonomic and functional analysis of long reads on a laptop. In BMC Bioinformatics, 21 (Supplement 13), 390. 18th Asia Pacific Bioinformatics Conference (APBC 2020), Seoul, South Korea, August 18, 2020 - August 20, 2020. BioMed Central (2020)

Lange, A.; Beyer, S.; Huson, D.; Henz, S.; Hantke, K.; Lanz, C.; Autenrieth, I.; Frick, J.: Different Survival Strategies of Gut Commensal Bacteria in IBD. In 6th Seeon Conference: Microbiota, Probiota and Host, 13, p. 57. 6th Seeon Conference: Microbiota, Probiota and Host, Seeon, Germany, June 28, 2013 - June 30, 2013. (2013)

Rätsch, G.; Clark, L.; Toomajian, C.; Ossowski, S.; Zeller, G.; Shinn, P.; Warthmann, N.; Hu, T.; Fu, G.; Hinds, D. et al.; Cheng, H.; Frazer, K.; Huson, D.; Schölkopf, B.; Nordborg , M.; Ecker, J.; Weigel, D.; Schneeberger, K.; Bohlen, A.: Discovering Common Sequence Variation in Arabidopsis thaliana. In 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008). 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, July 19, 2008 - July 23, 2008. (2008)

Fenselau de Felippes, F.; Dezulian, T.; Schneeberger, K.; Schröder, M.; Huson, D.; Weigel, D.: Evolution of miRNAs from random sequences. In 18th International Conference on Arabidopsis Research (ICAR 2007). 18th International Conference on Arabidopsis Research (ICAR 2007), Beijing, China, June 20, 2007 - June 23, 2007. (2007)

Huson, D.; Gautam, A.; Zeng, W.: Tutorial IP6: Interactive microbiome analysis using DIAMOND+MEGAN. 31st Conference on Intelligent Systems for Molecular Biology and 22nd European Conference on Computational Biology (ISMB/ECCB 2023), Lyon, France (2023)

Gautam, A.; Bhowmik, D.; Basu, S.; Zeng, W.; Lahiri, A.; Huson, D.; Paul, S.: Microbiome Metabolome Integration Platform (MMIP): a web-based platform for microbiome and metabolome data integration and feature identification. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany (2023)