Nowacka, M.; Boccaletto, P.; Jankowska, A.; Jarzynka, T.; Bujnicki, J.; Dunin-Horkawicz, S.: RRMdb: an evolutionary-oriented database of RNA recognition motif sequences. Database: The Journal of Biological Databases and Curation 2019, bay148 (2019)

Szczepaniak, K.; Ludwiczak, J.; Winski, A.; Dunin-Horkawicz, S.: Variability of the core geometry in parallel coiled-coil bundles. Journal of Structural Biology 204 (1), pp. 117 - 124 (2018)

Ludwiczak, J.; Jarmola, A.; Dunin-Horkawicz, S.: Combining Rosetta with molecular dynamics (MD): A benchmark of the MD-based ensemble protein design. Journal of Structural Biology 203 (1), pp. 54 - 61 (2018)

Grzeszczuk, M.; Bąk, A.; Banaś, A.; Urbanowicz, P.; Dunin-Horkawicz, S.; Gieldon, A.; Czaplewski, C.; Liwo, A.; Jagusztyn-Krynicka, E.: Impact of selected amino acids of HP0377 (Helicobacter pylori thiol oxidoreductase) on its functioning as a CcmG (cytochrome c maturation) protein and Dsb (disulfide bond) isomerase. PLOS ONE 13 (4), e0195358 (2018)

Boccaletto, P.; Magnus, M.; Almeida, C.; Zyla, A.; Astha, A.; Pluta, R.; Baginski, B.; Jankowska, A.; Dunin-Horkawicz, S.; Wirecki, T. et al.; Boniecki, M.; Stefaniak, F.; Bujnicki, J.: RNArchitecture: a database and a classification system of RNA families, with a focus on structural information. Nucleic Acids Research (London) 46 (D1), pp. D202 - D205 (2018)

Machnicka, M.; Dunin-Horkawicz, S.; de Crécy-Lagard, V.; Bujnicki, J.: tRNAmodpred: A computational method for predicting posttranscriptional modifications in tRNAs. Methods 107, pp. 34 - 41 (2016)

Korycinski, M.; Albrecht, R.; Ursinus, A.; Hartmann, M.; Coles, M.; Martin, J.; Dunin-Horkawicz, S.; Lupas, A.: STAC: A New Domain Associated with Transmembrane Solute Transport and Two-Component Signal Transduction Systems. Journal of Molecular Biology 427 (20), pp. 3327 - 3339 (2015)

Machnicka, M.; Kaminska, K.; Dunin-Horkawicz, S.; Bujnicki, J.: Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes. BMC Bioinformatics 16, 336 (2015)

Ferris, H.; Zeth, K.; Hulko, M.; Dunin-Horkawicz, S.; Lupas, A.: Axial helix rotation as a mechanism for signal regulation inferred from the crystallographic analysis of the E. coli serine chemoreceptor. Journal of Structural Biology 186 (3), pp. 349 - 356 (2014)

Hartmann, M.; Dunin-Horkawicz, S.; Hulko, M.; Martin, J.; Coles, M.; Lupas, A.: A soluble mutant of the transmembrane receptor Af1503 features strong changes in coiled-coil periodicity. Journal of Structural Biology 186 (3), pp. 357 - 366 (2014)

Dunin-Horkawicz, S.; Kopec, K.; Lupas, A.: Prokaryotic ancestry of eukaryotic protein networks mediating innate immunity and apoptosis. Journal of Molecular Biology 426 (7), pp. 1568 - 1582 (2014)

Machnicka, M.; Milanowska, K.; Oglou, O.; Purta, E.; Kurkowska, M.; Olchowik, A.; Januszewski, W.; Kalinowski, S.; Dunin-Horkawicz, S.; Rother, K. et al.; Helm, M.; Bujnicki, J.; Grosjean, H.: MODOMICS: a database of RNA modification pathways - 2013 update. Nucleic Acids Research (London) 41 (Database issue), pp. D262 - D267 (2013)

Hartmann, M.; Grin, I.; Dunin-Horkawicz, S.; Deiss, S.; Linke, D.; Lupas, A.; Hernandez Alvarez, B.: Complete fiber structures of complex trimeric autotransporter adhesins conserved in enterobacteria. Proceedings of the National Academy of Sciences of the United States of America 109 (51), pp. 20907 - 20912 (2012)

Poleszak, K.; Kaminska, K.; Dunin-Horkawicz, S.; Lupas, A.; Skowronek, K.; Bujknicki, J.: Delineation of structural domains and identification of functionally important residues in DNA repair enzyme exonuclease VII. Nucleic Acids Research (London) 40 (16), pp. 8163 - 8174 (2012)

Ferris, H.; Dunin-Horkawicz, S.; Hornig, N.; Hulko, M.; Martin, J.; Schultz, J.; Zeth, K.; Lupas, A.; Coles, M.: Mechanism of regulation of receptor histidine kinases. Structure 20 (1), pp. 56 - 66 (2012)

Ferris, H.; Dunin-Horkawicz, S.; García Mondéjar, L.; Hulko, M.; Hantke, K.; Martin, J.; Schultz, J.; Zeth, K.; Lupas, A.; Coles, M.: The mechanisms of HAMP-mediated signaling in transmembrane receptors. Structure 19 (3), pp. 378 - 385 (2011)

Dunin-Horkawicz, S.; Lupas, A.: Measuring the conformational space of square four-helical bundles with the program samCC. Journal of Structural Biology 170 (2), pp. 226 - 235 (2010)

Hernandez Alvarez, B.; Gruber, M.; Ursinus, A.; Dunin-Horkawicz, S.; Lupas, A.; Zeth, K.: A transition from strong right-handed to canonical left-handed supercoiling in a conserved coiled-coil segment of trimeric autotransporter adhesins. Journal of Structural Biology 170 (2), pp. 236 - 245 (2010)

Dunin-Horkawicz, S.; Lupas, A.: Comprehensive analysis of HAMP domains: implications for transmembrane signal transduction. Journal of Molecular Biology 397 (5), pp. 1156 - 1174 (2010)

Hartmann, M.; Ridderbusch, O.; Zeth, K.; Albrecht, R.; Testa, O.; Woolfson, D.; Sauer, G.; Dunin-Horkawicz, S.; Lupas, A.; Hernandez Alvarez, B.: A coiled-coil motif that sequesters ions to the hydrophobic core. Proceedings of the National Academy of Sciences of the United States of America 106 (40), pp. 16950 - 16955 (2009)