Publications of AN Lupas

Murray, D.; Jahnel, M.; Lauer, J.; Avellaneda, M.; Brouilly, N.; Cezanne, A.; Morales-Navarrete, H.; Perini, E.; Ferguson, C.; Lupas, A. et al.; Kalaidzidis, Y.; Parton, R.; Grill, S.; Zerial, M.: Author Correction: An endosomal tether undergoes an entropic collapse to bring vesicles together. Nature 637 (8048), p. E29 (2025)

Fruet, C.; Martinez-Goikoetxea, M.; Merino, F.; Lupas, A.: A computational model for lipid-anchored polysaccharide export by the outer-membrane protein GfcD. Biophysical Journal 123 (20), pp. 3491 - 3499 (2024)

Hu, Y.; Schwab, S.; Deiss, S.; Escudeiro, P.; van Heesch, T.; Joiner, J.; Vreede, J.; Hartmann, M.; Lupas, A.; Hernandez Alvarez, B. et al.; Alva, V.; Dame, R.: Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. Nucleic Acids Research 52 (14), gkae485, pp. 8193 - 8204 (2024)

Martinez-Goikoetxea, M.; Lupas, A.: New protein families with hendecad coiled coils in the proteome of life. Journal of Structural Biology 215 (3), 108007 (2023)

Maksymenko, K.; Maurer, A.; Aghaallaei, N.; Barry, C.; Borbarán-Bravo, N.; Ullrich, T.; Dijkstra, T.; Hernandez-Alvarez, B.; Müller, P.; Lupas, A. et al.; Skokowa, J.; ElGamacy, M.: The design of functional proteins using tensorized energy calculations. Cell Reports Methods 3 (8), 100560 (2023)

Martinez-Goikoetxea, M.; Lupas, A.: A conserved motif suggests a common origin for a group of proteins involved in the cell division of Gram-positive bacteria. PLoS One 18 (1), e0273136 (2023)

Yoshimoto, S.; Aoki, S.; Ohara, Y.; Ishikawa, M.; Suzuki, A.; Linke, D.; Lupas, A.; Hori, K.: Identification of the adhesive domain of AtaA from Acinetobacter sp. Tol 5 and its application in immobilizing Escherichia coli. Frontiers in Bioengineering and Biotechnology 10, e1095057 (2023)

Pereira, J.; Lupas, A.: New β-Propellers Are Continuously Amplified From Single Blades in all Major Lineages of the β-Propeller Superfamily. Frontiers in Molecular Biosciences 9, 895496 (2022)

Skokowa, J.; Hernandez Alvarez, B.; Coles, M.; Ritter, M.; Nasri, M.; Haaf, J.; Aghaallaei, N.; Xu, Y.; Mir, P.; Krahl, A.-C. et al.; Rogers, K.; Maksymenko, K.; Bajoghli, B.; Welte, K.; Lupas, A.; Müller, P.; ElGamacy, M.: A topological refactoring design strategy yields highly stable granulopoietic proteins. Nature Communications 13 (1), 2948 (2022)

Elhabashy, H.; Merino, F.; Alva, V.; Kohlbacher, O.; Lupas, A.: Exploring protein-protein interactions at the proteome level. Structure 30 (4), pp. 462 - 475 (2022)

Ramos, A.; Aquino, M.; García, G.; Gaspar, M.; de la Cruz, C.; Saavedra-Flores, A.; Brom, S.; Cervantes-Rivera, R.; Galindo-Sánchez, C.; Hernandez, R. et al.; Puhar, A.; Lupas, A.; Sepulveda, E.: RpuS/R Is a Novel Two-Component Signal Transduction System That Regulates the Expression of the Pyruvate Symporter MctP in Sinorhizobium fredii NGR234. Frontiers in Microbiology 13, 871077 (2022)

Masrati, G.; Landau, M.; Ben-Tal, R.; Lupas, A.; Kosloff, M.; Kosinski, J.: Integrative Structural Biology in the Era of Accurate Structure Prediction. Journal of Molecular Biology (London) 433 (20), 167127 (2021)

Solan, R.; Pereira, J.; Lupas, A.; Kolodny, R.; Ben-Tal, N.: Gram-negative outer-membrane proteins with multiple β-barrel domains. Proceedings of the National Academy of Sciences of the United States of America 118 (31), e2104059118 (2021)

Fuchs, A.; Alva, V.; Lupas, A.: An astonishing wealth of new proteasome homologs. Bioinformatics 37 (24), pp. 4694 - 4703 (2021)

Ben-Tal, N.; Lupas, A.: Editorial overview: Sequences and topology: "paths from sequence to structure". Current Opinion in Structural Biology 68, pp. VI - VIII (2021)

Lupas, A.; Pereira, J.; Alva, V.; Merino, F.; Coles, M.; Hartmann, M.: The breakthrough in protein structure prediction. Biochemical Journal 478 (10), pp. 1885 - 1890 (2021)

Fuchs, A.; Ammelburg, M.; Martin, J.; Schmitz, R.; Hartmann, M.; Lupas, A.: Archaeal Connectase is a specific and efficient protein ligase related to proteasome β subunits. Proceedings of the National Academy of Sciences of the United States of America 118 (11), e2017871118 (2021)

Pereira, J.; Lupas, A.: The VCBS superfamily forms a third supercluster of β-propellers that includes tachylectin and integrins. Bioinformatics 36 (24), pp. 5618 - 5622 (2021)

Gabler, F.; Nam, S.-Z.; Till, S.; Mirdita, M.; Steinegger, M.; Söding, J.; Lupas, A.; Alva, V.: Protein sequence analysis using the MPI Bioinformatics Toolkit. Current Protocols in Bioinformatics 72 (1), e108 (2020)

Hernandez Alvarez, B.; Skokowa, J.; Coles, M.; Mir, P.; Nasri, M.; Weidmann, L.; Rogers, K.; Welte, K.; Lupas, A.; Müller, P. et al.; ElGamacy, M.: Design of novel granulopoietic proteins by topological rescaffolding. PLoS Biology 18 (12), e3000919 (2020)