Publications of O Kohlbacher

Sachsenberg, T.; Stützer, A.; Chernev, A.; Netz, E.; Dijkstra, T.; Urlaub, H.; Kohlbacher, O.: A Novel Computational Approach for Simultaneous Identification of Protein-RNA and Protein-DNA Interactions from XL-MS Data. In 67th ASMS Conference on Mass Spectrometry and Allied Topics. 67th ASMS Conference on Mass Spectrometry and Allied Topics, Atlanta, GA, USA, June 02, 2019 - June 06, 2019. (2019)

Lehmann, K.; Kahles, A.; Toussaint, N.; Hüser, M.; Stark, S.; Sachsenberg, T.; Stegle, O.; Kohlbacher, O.; Sander, C.; Rätsch, G.: Comprehensive analysis of alternative splicing across tumors from 8,705 patients. In 68th Annual Meeting of the American Society of Human Genetics (ASHG 2018), 371, p. 186. 68th Annual Meeting of the American Society of Human Genetics (ASHG 2018), San Diego, CA, USA, October 16, 2018 - October 20, 2018. (2018)

Weidmann, L.; Dijkstra, T.; Kohlbacher, O.; Lupas, A.: The Power of Reuse in the Evolution of natural Proteins. In 4th Symposium on Non-Globular Proteins (NGP-NET 2018), O23, p. 31. 4th Symposium on Non-Globular Proteins (NGP-NET 2018), Druskininkai, Lithuania, September 12, 2018 - September 14, 2018. (2018)

Stuetzer, A.; Chernev, A.; Sachsenberg, T.; Tauber, M.; Fischle, W.; Kohlbacher, O.: Protein-DNA Interactions Analyzed by Cross-Linking of Recombinant and Native Chromatin Samples. In 66th ASMS Conference on Mass Spectrometry and Allied Topics. 66th ASMS Conference on Mass Spectrometry and Allied Topics, San Diego, CA, USA, June 03, 2018 - June 07, 2018. (2018)

Stützer, A.; Kappert, C.; Chernev, A.; Mucek, K.; Kramer, K.; Sachsenberg, T.; Kohlbacher, O.: Mass Spectrometric Analysis of UV and Chemical protein-DNA Cross-links in a Chromatin Model. In 65th ASMS Conference on Mass Spectrometry and Allied Topics. 65th ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, USA, June 04, 2017 - June 08, 2017. (2017)

Schultheiss, S.; Busch, W.; Lohmann, J.; Kohlbacher, O.; Rätsch, G.: KIRMES: kernel-based identification of regulatory modules in euchromatic sequences. In BMC Bioinformatics, 10 (Supplement 13), O1. 5th International Society for Computational Biology Student Council (ISCB 2009), Stockholm, Sweden, June 27, 2009. BioMed Central (2009)

Schultheiss, S.; Busch, W.; Lohmann, J.; Kohlbacher, O.; Rätsch, G.: KIRMES: Kernel-based Identification of Regulatory Modules in Euchromatic Sequences. In 4th International Society for Computational Biology Student Council Symposium, 38, p. 22. Fourth International Society for Computational Biology Student Council Symposium (ISCB 2008) , Toronto, Canada, July 18, 2008. (2008)

Elhabashy, H.; Netz, E.; Kohlbacher, O.: XLEC: Large-scale prediction and modeling of protein-protein interaction using sequence co-evolution and cross-linking data. 11th Symposium on Structural Proteomics (SSP 2023), Utrecht, The Netherlands (2023)

Kohlbacher, O.: From Omics Data to Therapies: Personalizing Treatments. German Conference on Bioinformatics (GCB 2019), Heidelberg, Germany (2019)

Kohlbacher, O.: Closing the translational gap: integrating of high‐throughput data for personalized cancer treatments into clinical processes. e:Med Meeting 2017 on Systems Medicine, Göttingen, Germany (2017)

Röhl, A.; Netz, E.; Kohlbacher, O.; Elhabashy, H.: CLAUDIO: An automated cross-linking data analysis and validation workflow. 11th Symposium on Structural Proteomics (SSP 2023), Utrecht, The Netherlands (2023)

Netz, E.; Dijkstra, T.; Sachsenberg, T.; Kohlbacher, O.: OpenPepXL: An open-source tool for sensitive identification of cross-linked peptides in XL-MS. 68th ASMS Conference on Mass Spectrometry and Allied Topics (2020)

Elhabashy, H.; Kohlbacher, O.: Cross-Linking Mass Spectrometry and Evolutionary Couplings: A Hybrid Approach for Interaction Prediction and Structure Elucidation of Protein- Protein Complexes. 9th Symposium on Structural Proteomics (9SSP), Göttingen, Germany (2019)

Sürün, B.; Schärfe, C.; Divine, M.; Heinrich, J.; Toussaint, N.; Zimmermann, L.; Beha, J.; Kohlbacher, O.: ClinVAP: A Reporting strategy from variants to therapeutic options. German Conference on Bioinformatics (GCB 2019), Heidelberg, Germany (2019)

Bichmann, L.; Nelde, A.; Ghosh, M.; Sachsenberg, T.; Mohr, C.; Peltzer, A.; Kuchenbecker, A.; Walz, J.; Stevanović, S.; Rammensee, H.-G. et al.; Kohlbacher, O.: MHCquant: Automated and Reproducible Data Analysis for Immunopeptidomics. 67th ASMS Conference on Mass Spectrometry and Allied Topics, Atlanta, GA, USA (2019)

Jeong, K.; Kim, J.; Gaikwad, M.; Hidaya, S.; Schlüter, H.; Kohlbacher, O.: FLASHDeconv: Ultra-Fast High-Quality Deconvolution Enables Online Processing of Top-Down MS Data. 67th ASMS Conference on Mass Spectrometry and Allied Topics, Atlanta, GA, USA (2019)

Netz, E.; Dijkstra, T.; Sachsenberg, T.; Kohlbacher, O.: OpenPepXL: Sensitive, Comprehensive Identification and Quantification of Protein-Protein Cross-Links. 67th ASMS Conference on Mass Spectrometry and Allied Topics, Atlanta, GA, USA (2019)

Netz, E.; Dijkstra, T.; Kohlbacher, O.: OpenPepXL: a versatile and sensitive XL-MS identification tool. 8th Symposium on Structural Proteomics (8SSP), Berlin, Germany (2018)

Weidmann, L.; Dijkstra, T.; Kohlbacher, O.; Lupas, A.: The prevalence of conservative evolution in the protein sequence universe. CAS Conference 2018: Molecular Origins of LIFE, München, Germany (2018)

Netz, E.; Dijkstra, T.; Kohlbacher, O.: OpenPepXL: a Versatile and Sensitive XL-MS Identification Tool. 66th ASMS Conference on Mass Spectrometry and Allied Topics, San Diego, CA, USA (2018)