Publications of S Laubinger

Szabo, E.; Reichert, P.; Lehniger, M.-K.; Ohmer, M.; de Francisco Amorim, M.; Gowik, U.; Schmitz-Linneweber, C.; Laubinger, S.: Metabolic Labeling of RNAs Uncovers Hidden Features and Dynamics of the Arabidopsis Transcriptome. Plant Cell 32 (4), pp. 871 - 887 (2020)

de Francisco Amorim, M.; Willing, E.-M.; Szabo, E.; Francisco-Mangilet, A.; Droste-Borel, I.; Macek, B.; Schneeberger, K.; Laubinger, S.: The U1 snRNP Subunit LUC7 Modulates Plant Development and Stress Responses via Regulation of Alternative Splicing. The Plant Cell 30 (11), pp. 2838 - 2854 (2018)

Speth, C.; Szabo, E.; Martinho, C.; Collani, S.; zur Oven-Krockhaus, S.; Richter , S.; Droste-Borel, I.; Macek, B.; Stierhof, Y.-D.; Schmid, M. et al.; Liu, C.; Laubinger, S.: Arabidopsis RNA processing factor SERRATE regulates the transcription of intronless genes. eLife 7, e37078 (2018)

Speth, C.; Laubinger, S.: RACK1 and the microRNA pathway: is it déjà-vu all over again? Plant Signaling & Behavior 9 (2), e27909 (2014)

Speth, C.; Willing, E.-M.; Rausch, S.; Schneeberger, K.; Laubinger, S.: RACK1 scaffold proteins influence miRNA abundance in Arabidopsis. The Plant Journal 76 (3), pp. 433 - 445 (2013)

Schwab, R.; Speth, C.; Laubinger, S.; Voinnet, O.: Enhanced microRNA accumulation through stemloop-adjacent introns. EMBO Reports 14 (7), pp. 615 - 621 (2013)

Manavella, P.; Hagmann, J.; Ott, F.; Laubinger, S.; Franz, M.; Macek, B.; Weigel, D.: Fast-forward genetics identifies plant CPL phosphatases as regulators of miRNA processing factor HYL1. Cell 151 (4), pp. 859 - 870 (2012)

Sonmez, C.; Bäurle, I.; Magusin, A.; Dreos, R.; Laubinger, S.; Weigel, D.; Dean, C.: RNA 3' processing functions of Arabidopsis FCA and FPA limit intergenic transcription. Proceedings of the National Academy of Sciences of the United States of America 108 (20), pp. 8508 - 8513 (2011)

Eichner, J.; Zeller, G.; Laubinger, S.; Rätsch, G.: Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays. BMC Bioinformatics 12, 55 (2011)

Laubinger, S.; Zeller, G.; Henz, S.; Buechel, S.; Sachsenberg, T.; Wang, J.-W.; Rätsch, G.; Weigel, D.: Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome. Proceedings of the National Academy of Sciences of the United States of America 107 (41), pp. 17466 - 17573 (2010)

Fahlgren, N.; Jogdeo, S.; Kasschau, K.; Sullivan, C.; Chapman, E.; Laubinger, S.; Smith, L.; Dasenko, M.; Givan, S.; Weigel, D. et al.; Carrington, J.: MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana. Plant Cell 22 (4), pp. 1074 - 1089 (2010)

Rehrauer, H.; Aquino, C.; Gruissem, W.; Henz, S.; Hilson, P.; Laubinger, S.; Naouar, N.; Patrignani , A.; Rombauts, S.; Shu, H. et al.; Van de Peer, Y.; Vuylsteke, M.; Weigel, D.; Zeller, G.; Hennig, L.: AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling. Plant Physiology 152 (2), pp. 487 - 499 (2010)

Zeller, G.; Henz, S.; Widmer, C.; Sachsenberg, T.; Rätsch, G.; Weigel, D.; Laubinger, S.: Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays. The Plant Journal 58 (6), pp. 1068 - 1082 (2009)

Laubinger, S.; Zeller, G.; Henz, S.; Sachsenberg, T.; Widmer, C.; Widmer, C.; Naouar, N.; Vuylsteke, M.; Schölkopf, B.; Rätsch, G. et al.; Weigel, D.: At-TAX: A Whole Genome Tiling Array Resource for Developmental Expression Analysis and Transcript Identification in Arabidopsis thaliana. Genome Biology 9 (7), R112 (2008)

Laubinger, S.; Sachsenberg, T.; Zeller, G.; Busch, W.; Lohmann, J.; Rätsch, G.; Weigel, D.: Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 105 (25), pp. 8795 - 8800 (2008)

Kaster, M.; Laubinger, S.: Determining Nucleosome Position at Individual Loci After Biotic Stress Using MNase-qPCR. In: Methods in Molecular Biology, Vol. 1398. Springer, US (2016)

Rausch, S.; Laubinger, S.: Rapid Assessment of DNA Methylation Changes in Response to Salicylic Acid by Chop-qPCR. In: Methods in Molecular Biology, Vol. 1398. Springer, US (2016)

Zeller, G.; Henz, S.; Laubinger, S.; Weigel, D.; Rätsch, G.: Transcript normalization and segmentation of tiling array data. In: Pacific Symposium on Biocomputing (PSB 2008), pp. 527 - 538. Pacific Symposium on Biocomputing (PSB 2008), Fairmont Orchid, HI, USA, January 04, 2008 - January 08, 2008. (2008)

Zeller, G.; Eichner, J.; Sachsenberg, T.; Laubinger, S.; Weigel, D.; Rätsch, G.: Re-Annotating The Arabidopsis Transcriptome With Tiling Microarrays. In 4th International Society for Computational Biology Student Council Symposium, 32, p. 21. Fourth International Society for Computational Biology Student Council Symposium (ISCB 2008) , Toronto, Canada, July 18, 2008. (2008)

Laubinger, S.; Zeller, G.; Henz, S.; Sachsenberg, T.; Rätsch, G.; Weigel, D.: Transcriptome profiling of RNA-processing mutants: Uncovering the hidden layer of the Arabidopsis transcriptome. 20th International Conference on Arabidopsis Research (ICAR 2009), Edinburgh, UK (2009)