Publications of J Fitz

Wu, R.; Lucke, M.; Jang, Y.-T.; Zhu, W.; Symeonidi, E.; Wang, C.; Fitz, J.; Wang, X.; Schwab, R.; Weigel, D.: An efficient CRISPR vector toolbox for engineering large deletions in Arabidopsis thaliana. Plant Methods 14, 65 (2018)

Togninalli, M.; Seren, U.; Meng, D.; Fitz, J.; Nordborg, M.; Weigel, D.; Borgwardt, K.; Korte, A.; Grimm, D.: The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog. Nucleic Acids Research (London) 46 (D1), pp. D1150 - D1156 (2018)

Seren, Ü.; Grimm, D.; Fitz, J.; Weigel, D.; Nordborg, M.; Borgwardt, K.; Korte, A.: AraPheno: a public database for Arabidopsis thaliana phenotypes. Nucleic Acids Research (London) 45 (D1), pp. D1054 - D1059 (2017)

1001 Genomes Consortium; Alonso-Blanco, C.; Andrade, J.; Becker, C.; Bemm, F.; Bergelson, J.; Borgwardt, K.; Cao, J.; Chae, E.; Dezwaan, T. et al.; Ding, W.; Ecker, J.; Exposito-Alonso, M.; Farlow, A.; Fitz, J.; Gan, X.; Grimm, D.; Hancock, A.; Henz, S.; Holm, S.; Horton, M.; Jarsulic, M.; Kerstetter, R.; Korte, A.; Korte, P.; Lanz, C.; Lee, C.-R.; Meng, D.; Michael, T.; Mott, R.; Muliyati, N.; Nägele, T.; Nagler, M.; Nizhynska, V.; Nordborg, M.; Novikova, P.; Picó, F.; Platzer, A.; Rabanal, F.; Rodriguez, A.; Rowan, B.; Salomé, P.; Schmid, K.; Schmitz, R.; Seren, Ü.; Sperone, F.; Sudkamp, M.; Svardal, H.; Tanzer, M.; Todd, D.; Volchenboum, S.; Wang, C.; Wang, G.; Wang, X.; Weckwerth, W.; Weigel, D.; Zhou, X.: 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. Cell 166, pp. 481 - 491 (2016)

Smith, L.; Burbano, H.; Wang, X.; Fitz, J.; Wang, G.; Ural-Blimke, Y.; Weigel, D.: Rapid divergence and high diversity of miRNAs and miRNA targets in the Camelineae. The Plant Journal 81 (4), pp. 597 - 610 (2015)

Hagmann, J.; Becker, C.; Müller, J.; Stegle, O.; Meyer, R.; Wang, G.; Schneeberger, K.; Fitz, J.; Altmann, T.; Bergelson, J. et al.; Borgwardt, K.; Weigel, D.: Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage. PLoS Genetics 11 (1), e1004920 (2015)

Hauser, F.; Chen, W.; Deinlein, U.; Chang, K.; Ossowski, S.; Fitz, J.; Hannon, G.; Schroeder, J.: A genomic-scale artificial microRNA library as a tool to investigate the functionally redundant gene space in Arabidopsis. Plant Cell 25 (8), pp. 2848 - 2863 (2013)

Joshi, H.; Christiansen, K.; Fitz, J.; Cao, J.; Lipzen, A.; Martin, J.; Smith-Moritz, A.; Pennacchio, L.; Schackwitz, W.; Weigel, D. et al.; Heazlewood, J.: 1001 Proteomes: a functional proteomics portal for the analysis of Arabidopsis thaliana accessions. Bioinformatics 28 (10), pp. 1303 - 1306 (2012)

Cao, J.; Schneeberger, K.; Ossowski, S.; Günther, T.; Bender, S.; Fitz, J.; König, D.; Lanz, C.; Stegle, O.; Lippert, C. et al.; Wang, X.; Ott, F.; Müller, J.; Alonso-Blanco, C.; Borgwardt, K.; Schmid, K.; Weigel, D.: Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nature Genetics 43 (10), pp. 956 - 963 (2011)

Guo, Y.-L.; Fitz, J.; Schneeberger, K.; Ossowski, S.; Cao, J.; Weigel, D.: Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiology 157 (2), pp. 757 - 769 (2011)

Schneeberger, K.; Ossowski, S.; Ott, F.; Klein, J.; Wang, X.; Lanz, C.; Smith, L.; Cao, J.; Fitz, J.; Warthmann, N. et al.; Henz, S.; Huson, D.; Weigel, D.: Reference-guided assembly of four diverse Arabidopsis thaliana genomes. Proceedings of the National Academy of Sciences of the United States of America 108 (25), pp. 10249 - 10254 (2011)

Salomé, P.; Bomblies, K.; Fitz, J.; Laitinen, R.; Yant, L.; Weigel, D.: The recombination landscape in Arabidopsis thaliana F2 populations. Heredity 108 (4), pp. 447 - 455 (2011)

Bomblies, K.; Yant, L.; Laitinen, R.; Kim, S.-T.; Hollister, J.; Warthmann, N.; Fitz, J.; Weigel, D.: Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana. PLoS Genetics 6 (3), e1000890 (2010)

Warthmann, N.; Fitz, J.; Weigel, D.: MSQT for choosing SNP assays from multiple DNA alignments. Bioinformatics 23 (20), pp. 2784 - 2787 (2007)

Teasdale, L.; Shirsekar, G.; Collenberg, M.; Murray, K.; Contreras-Garrido, A.; Schlegel, T.; van Ess, L.; Juettner, j.; Lanz, C.; Deusch, O. et al.; Fitz, J.; Mencia, R.; Velthoven, R.; Drost, H.-G.; Weigel, D.: Birth, Death, and Persistence in NLR Diversity in the Arabidopsis Immune System. In 12th International Congress of Plant Pathology (ICPP 2023), P5.5-010, p. 385. 12th International Congress of Plant Pathology (ICPP 2023), Lyon, France, August 20, 2023 - August 25, 2023. (2023)

Teasdale, L.; Shirsekar, G.; Collenberg, M.; Murray, K.; Contreras Garrido, A.; van Ess, L.; Juettner, j.; Lanz, C.; Fitz, J.; Drost, H.-G. et al.; Weigel, D.: Challenges of annotating complex genes in the Arabidopsis long read genome collection. In 33rd International Conference on Arabidopsis Research (ICAR 2023), WS02-06. 33rd International Conference on Arabidopsis Research (ICAR 2023), Chiba, Japan, June 05, 2023 - June 06, 2023. (2023)

Smith, L.; Burbano, H.; Wang, X.; Fitz, J.; Ural, Y.; Weigel, D.: miRNA evolution in the Camelineae. In 24th International Conference on Arabidopsis Research (ICAR 2013), WORK-05-01, p. 43. 24th International Conference on Arabidopsis Research (ICAR 2013), Sydney, Australia, June 24, 2013 - June 28, 2013. (2013)

Warthmann, N.; Fitz, J.; Weigel, D.: Mining publicly available sequence information to detect SNP markers. In 15th International Conference on Arabidopsis Research, T06-027, p. 372. 15th International Conference on Arabidopsis Research (ICAR 2004) , Berlin, Germany, July 11, 2004 - July 14, 2004. Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany (2004)

The 1001 Genomes Plus Consortium; Alonso-Blanco, C.; Ashkenazy, H.; Baduel, P.; Bao, Z.; Becker, C.; Caillieux, E.; Colot, V.; Crosbie, D.; De Oliveira, L. et al.; Fitz, J.; Fritschi, K.; Grigoreva, E.; Guo, Y.; Habring, A.; Henderson, I.; Hou, X.-H.; Hu, Y.; Igolkina, A.; Kang, M.; Kemen, E.; Kersey, P.; Kornienko, A.; Lian, Q.; Liu, H.; Liu, J.; Lucke, M.; Mayjonade, B.; Mercier, R.; Mollá Morales, A.; Movilli, A.; Murray, K.; Naish, M.; Nordborg, M.; Rabanal, F.; Roux, F.; Schandry, N.; Schneeberger, K.; Schwab, R.; Shirsekar, G.; Sushko, S.; Tao, Y.; Teasdale, L.; Vorbrugg, S.; Weigel, D.; Xian, W.: The 1001G+ project: A curated collection of Arabidopsis thaliana long-read genome assemblies to advance plant research. (submitted)

Teasdale, L.; Murray, K.; Collenberg, M.; Contreras-Garrido, A.; Schlegel, T.; van Ess, L.; Jüttner, J.; Lanz, C.; Deusch, O.; Fitz, J. et al.; Mencia, R.; van Velthoven, R.; Drost, H.-G.; Weigel, D.; Shirsekar, G.: Pangenomic context reveals the extent of intraspecic plant NLR evolution. (submitted)