Publications of F Bemm

Barragan, A.; Collenberg, M.; Schwab, R.; Kersten, S.; Kerstens, M.; Požárová, D.; Bezrukov, I.; Bemm, F.; Kolár, F.; Weigel, D.: Deleterious Phenotypes in Wild Arabidopsis arenosa Populations Are Common and Linked to Runs of Homozygosity. G3: Genes, Genomes, Genetics 14 (3), jkad290 (2024)

Fraser, B.; Whiting, J.; Paris, J.; Weadick, C.; Parsons, P.; Charlesworth, D.; Bergero, R.; Bemm, F.; Hoffmann, M.; Kottler, V. et al.; Liu, C.; Dreyer, C.; Weigel, D.: Improved Reference Genome Uncovers Novel Sex-Linked Regions in the Guppy (Poecilia reticulata). Genome Biology and Evolution 12 (10), pp. 1789 - 1805 (2020)

Kreiner, J.; Giacomini, D.; Bemm, F.; Waithaka, B.; Regalado, J.; Lanz, C.; Hildebrandt, J.; Sikkema, P.; Tranel, P.; Weigel, D. et al.; Stinchcombe, J.; Wright, S.: Multiple modes of convergent adaptation in the spread of glyphosate-resistant Amaranthus tuberculatus. Proceedings of the National Academy of Sciences of the United States of America 116 (42), pp. 21076 - 21084 (2019)

Van de Weyer, A.-L.; Monteiro, F.; Furzer, O.; Nishimura, M.; Cevik, V.; Witek, K.; Jones, J.; Dangl, J.; Weigel, D.; Bemm, F.: A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana. Cell 178 (5), pp. 1260 - 1272 (2019)

Koenig, D.; Hagmann, J.; Li, R.; Bemm, F.; Slotte, T.; Neuffer, B.; Wright, S.; Weigel, D.: Long-term balancing selection drives evolution of immunity genes in Capsella. eLife 8, e43606 (2019)

Zhu, W.; Zaidem, M.; Van de Weyer, A.-L.; Gutaker, R.; Chae, E.; Kim, S.-T.; Bemm, F.; Lei, L.; Todesco, M.; Schwab, R. et al.; Unger, F.; Beha, M.; Demar, M.; Weigel, D.: Modulation of ACD6 dependent hyperimmunity by natural alleles of an Arabidopsis thaliana NLR resistance gene. PLoS Genetics 14 (9), e1007628 (2018)

Alexandre, C.; Urton, J.; Jean-Baptiste, K.; Huddleston, J.; Dorrity, M.; Cuperus, J.; Sullivan, A.; Bemm, F.; Jolic, D.; Arsovski, A. et al.; Thompson, A.; Nemhauser, J.; Fields, S.; Weigel, D.; Bubb, K.; Queitsch, C.: Complex Relationships between Chromatin Accessibility, Sequence Divergence, and Gene Expression in Arabidopsis thaliana. Molecular Biology and Evolution 35 (4), pp. 837 - 854 (2018)

Michael, T.; Jupe, F.; Bemm, F.; Motley, S.; Sandoval, J.; Lanz, C.; Loudet, O.; Weigel, D.; Ecker, J.: High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nature Communications 9, 541 (2018)

Rödelsperger, C.; Meyer, J.; Prabh, N.; Lanz, C.; Bemm, F.; Sommer, R.: Single-Molecule Sequencing Reveals the Chromosome-Scale Genomic Architecture of the Nematode Model Organism Pristionchus pacificus. Cell Reports 21 (3), pp. 834 - 844 (2017)

Jaleta, T.; Zhou, S.; Bemm, F.; Schär, F.; Khieu, V.; Muth, S.; Odermatt, P.; Lok, J.; Streit, A.: Different but overlapping populations of Strongyloides stercoralis in dogs and humans: Dogs as a possible source for zoonotic strongyloidiasis. PLoS Neglected Tropical Diseases 11 (8), e0005752 (2017)

Ankenbrand, M.; Weber, L.; Becker, D.; Förster, F.; Bemm, F.: TBro: visualization and management of de novo transcriptomes. Database: The Journal of Biological Databases and Curation 2016, baw146 (2016)

1001 Genomes Consortium; Alonso-Blanco, C.; Andrade, J.; Becker, C.; Bemm, F.; Bergelson, J.; Borgwardt, K.; Cao, J.; Chae, E.; Dezwaan, T. et al.; Ding, W.; Ecker, J.; Exposito-Alonso, M.; Farlow, A.; Fitz, J.; Gan, X.; Grimm, D.; Hancock, A.; Henz, S.; Holm, S.; Horton, M.; Jarsulic, M.; Kerstetter, R.; Korte, A.; Korte, P.; Lanz, C.; Lee, C.-R.; Meng, D.; Michael, T.; Mott, R.; Muliyati, N.; Nägele, T.; Nagler, M.; Nizhynska, V.; Nordborg, M.; Novikova, P.; Picó, F.; Platzer, A.; Rabanal, F.; Rodriguez, A.; Rowan, B.; Salomé, P.; Schmid, K.; Schmitz, R.; Seren, Ü.; Sperone, F.; Sudkamp, M.; Svardal, H.; Tanzer, M.; Todd, D.; Volchenboum, S.; Wang, C.; Wang, G.; Wang, X.; Weckwerth, W.; Weigel, D.; Zhou, X.: 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. Cell 166, pp. 481 - 491 (2016)

Kawakatsu, T.; Huang, S.-S.; Jupe, F.; Sasaki, E.; Schmitz, R.; Urich, M.; Castanon, R.; Nery, J.; Barragan, C.; He, Y. et al.; Chen, H.; Dubin, M.; Lee, C.-R.; Wang, C.; Bemm, F.; Becker, C.; O'Neil, R.; O'Malley, R.; Quarless, D.; 1001 Genomes Consortium; Schork, N.; Weigel, D.; Nordborg, M.; Ecker, J.: Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell 166 (2), pp. 492 - 505 (2016)

Bemm, F.; Becker, D.; Larisch, C.; Kreuzer, I.; Escalante-Perez, M.; Schulze, W.; Ankenbrand, M.; Van de Weyer, A.-L.; Krol, E.; Al-Rasheid, R. et al.; Mithöfer, A.; Weber, A.; Schultz, J.; Hedrich, R.: Venus flytrap carnivorous lifestyle builds on herbivore defense strategies. Genome Research 26, pp. 812 - 825 (2016)

Bemm, F.; Weiß, C.; Schultz, J.; Förster, F.: Genome of a tardigrade: Horizontal gene transfer or bacterial contamination? Proceedings of the National Academy of Sciences of the United States of America 113 (22), pp. E3054 - E3056 (2016)

Scherzer, S.; Böhm, J.; Krol, E.; Shabala, L.; Kreuzer, I.; Larisch, C.; Bemm, F.; Al-Rasheid, K.; Shabala, S.; Rennenberg, H. et al.; Neher, E.; Hedrich, R.: Calcium sensor kinase activates potassium uptake systems in gland cells of Venus flytraps. Proceedings of the National Academy of Sciences of the United States of America 112 (23), pp. 7309 - 7314 (2015)

Schwandner, A.; Ochßner, I.; Hausmann, L.; Kamal, N.; Pucker, B.; Holtgräwe, D.; Bemm, F.; Weigel, D.; Weisshaar, B.; Töpfer, R.: Determination of genetic loci in the control network of grapevine flowering. XII International Conference on Grapevine Breeding and Genetics, Bordeaux, France, July 15, 2018 - July 20, 2018. ISHS Acta Horticulturae 1248, O42, pp. 331 - 336 (2018)

Maerkle, H.; Ruffley, M.; Demirjian, C.; Chang, T.-H.; McLoughlin, C.; Thoen, M.; Lucas, L.; Ahmad, A.; Radharamanan, K.; Mayjonade, B. et al.; Hernandez, A.; Gautam, A.; Lyssak, M.; Bemm, F.; Wrightsman, T.; Weigel, D.; Roux, F.; Jhaand, A.; Bergelson, J.: Exploring the NLR-Effector Interactome: A Journey from Ecological Complexity to Functional Biology. In 34th International Conference on Arabidopsis Research (ICAR 2024), P9-5, p. 579. 34th International Conference on Arabidopsis Research (ICAR 2024), San Diego, CA, USA, July 15, 2024 - July 19, 2024. (2024)

Furzer, O.; Van de Weyer, A.-L.; Monteiro, F.; Nishimura, M.; Cevik, V.; Witek, K.; Jones, J.; Dangl, J.; Weigel, D.; Bemm, F.: The Arabidopsis thaliana pan-NLRome. In 30th International Conference on Arabidopsis Research (ICAR 2019), 507. 30th International Conference on Arabidopsis Research (ICAR 2019), Wuhan, China, June 16, 2019 - June 21, 2019. (2019)

Kreiner, M.; Giacomini, D.; Waithaka, B.; Bemm, F.; Lanz, C.; Hildebrandt, J.; Regalado, J.; Sikkema, P.; Tranel, P.; Weigel, D. et al.; Stinchcombe, J.; Wright, S.: Whole-Genome Sequencing Provides Insights into Waterhemp Evolution. In Fifty-Ninth Meeting of the Weed Science Society of America (WSSA 2019). Fifty-Ninth Meeting of the Weed Science Society of America (WSSA 2019), New Orleans, LA, USA, February 11, 2019 - February 14, 2019. (2019)