Publications of J Hagmann

Grimm, D.; Hagmann, J.; Koenig, D.; Weigel, D.; Borgwardt, K.: Accurate indel prediction using paired-end short reads. BMC Genomics 14, 132 (2013)

Manavella, P.; Hagmann, J.; Ott, F.; Laubinger, S.; Franz, M.; Macek, B.; Weigel, D.: Fast-forward genetics identifies plant CPL phosphatases as regulators of miRNA processing factor HYL1. Cell 151 (4), pp. 859 - 870 (2012)

Guo, Y.-L.; Todesco, M.; Hagmann, J.; Das, S.; Weigel, D.: Independent FLC mutations as causes of flowering-time variation in Arabidopsis thaliana and Capsella rubella. Genetics 192 (2), pp. 729 - 739 (2012)

Becker, C.; Hagmann, J.; Müller, J.; Koenig, D.; Stegle, O.; Borgwardt, K.; Weigel, D.: Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature 480 (7376), pp. 245 - 249 (2011)

Davila, J.; Arrieta-Montiel, M.; Wamboldt, Y.; Cao, J.; Hagmann, J.; Shedge, V.; Xu, Y.-Z.; Weigel, D.; Mackenzie, S.: Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis. BMC Biology 9, 64 (2011)

Schneeberger, K.; Hagmann, J.; Ossowski, S.; Warthmann, N.; Gesing, S.; Kohlbacher, O.; Weigel, D.: Simultaneous alignment of short reads against multiple genomes. Genome Biology 10 (9), R98 (2009)

Becker, C.; Wibowo, A.; Marconi, G.; Hagmann, J.; Papareddy, R.; Kageyama, J.; Weigel, D.; Gutierrez-Marcos, J.: Exposure to environmental stress induces a transient epigenetic memory response in Arabidopsis. In 26th International Conference on Arabidopsis Research (ICAR 2015), 108, p. 48. 26th International Conference on Arabidopsis Research (ICAR 2015), Paris, France, July 05, 2015 - July 09, 2015. (2015)

Kageyama, J.; Becker, C.; Müller, J.; Hagmann, J.; Weigel, D.: Methylome variation within and between genetically identical Arabidopsis thaliana individuals. 26th International Conference on Arabidopsis Research (ICAR 2015), Paris, France (2015)

Lutz, U.; Posé, D.; Pfeifer, M.; Gundlach, H.; Hagmann, J.; Wang, C.; Weigel, D.; Mayer, K.; Schmid, M.; Schwechheimer, C.: Modulation of ambient temperaturedependent flowering time in Arabidopsis thaliana by natural variation of FLOWERING LOCUS M. 26th International Conference on Arabidopsis Research (ICAR 2015), Paris, France (2015)

Warthmann, N.; Chen, H.; Ossowski, S.; Hervé, P.; Hagmann, J.; Zaidem, M.; Choi, I.-R.; Weigel, D.: Finding the Genes and Proving Causality: New Forward and Reverse Genetic Tools and their Application in Rice. Tropentag 2011: International Research on Food Security, Natural Resource Management and Rural Development: Development on the margin, Bonn, Germany (2011)

Kim, S.-T.; Mao, J.-F.; Hagmann, J.; Lanz, C.; Cao, J.; Guo, Y.-L.; Schneeberger, K.; Weigel, D.: Contrasting whole-genome sequence diversity in the selfer Arabidopsis thaliana and the outcrosser A. lyrata. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany (2011)

Koenig, D.; Slotte, T.; Hagmann, J.; Neuffer, B.; Weigel, D.: Population genomic analysis of speciation and radiation in Capsella rubella. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany (2011)

Grimm, D.; Hagmann, J.; Koenig, D.; Weigel, D.; Borgwardt, K.: Support Vector Machines for finding deletions and short insertions using paired-end short reads. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB ECCB 2011), Wien, Austria (2011)

Jean, G.; Raetsch, G.; Kahles, A.; Sonnenburg, S.; Schneeberger, K.; Hagmann, J.; De Bona, F.; Weigel, D.: Fast and Accurate RNA-Seq alignments with PALMapper. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB ECCB 2011), Wien, Austria (2011)

Rätsch, G.; Jean, G.; Kahles, A.; Sonnenburg, S.; De Bona, F.; Schneeberger, K.; Hagmann, J.; Weigel, D.: PALMapper: Fast and Accurate Spliced Alignments of Sequence Reads. 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA (2010)

Hagmann, J.: Characterizing short-term evolution of DNA methylation in A. thaliana using next-generation sequencing. Dissertation, 180 pp., Eberhard-Karls-Universität, Tübingen, Germany (2015)