Publications of RE Ley

Jin, Z.; Di Rienzi, S.; Werner, J.; Angenent, L.; Dangl, J.; Fowle, D.; Ley, R.: Novel Rhizosphere Soil Alleles for the Enzyme 1-Aminocyclopropane-1-Carboxylate Deaminase Queried for Function with an In Vivo Competition Assay. Applied and Environmental Microbiology 82 (4), pp. 1050 - 1059 (2015)

Blekhman, R.; Goodrich, J.; Huang, K.; Sun, Q.; Bukowski, R.; Bell, J.; Spector, T.; Keinan, A.; Ley, R.; Gevers, D. et al.; Clark, A.: Host genetic variation impacts microbiome composition across human body sites. Genome Biology: Biology for the Post-Genomic Era 16 (1), 191 (2015)

Barrios, C.; Beaumont, M.; Pallister, T.; Villar, J.; Goodrich, J.; Clark, A.; Pascual, J.; Ley, R.; Spector, T.; Bell, J. et al.; Menni, C.: Gut-Microbiota-Metabolite Axis in Early Renal Function Declin. PLoS One 10 (8), e0134311 (2015)

Hacquard, S.; Garrido Oter, R.; González, A.; Spaepen, S.; Ackermann, G.; Lebeis, S.; McHardy, A.; Dangl, J.; Knight, R.; Ley, R. et al.; Schulze-Lefert, P.: Microbiota and Host Nutrition across Plant and Animal Kingdoms. Cell Host & Microbe 17 (5), pp. 603 - 613 (2015)

Chassaing, B.; Koren, O.; Goodrich, J.; Poole, A.; Srinivasan, S.; Ley, R.; Gewirtz, A.: Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome. Nature 519 (7541), pp. 92 - 96 (2015)

Panke-Buisse, K.; Poole, A.; Goodrich, J.; Ley, R.; Kao-Kniffin, J.: Selection on soil microbiomes reveals reproducible impacts on plant function. The ISME Journal 9 (4), pp. 980 - 989 (2015)

Ley, R.: The gene-microbe link. Nature 518 (7540), p. S7 (2015)

Chassaing, B.; Ley, R.; Gewirtz, A.: Intestinal epithelial cell toll-like receptor 5 regulates the intestinal microbiota to prevent low-grade inflammation and metabolic syndrome in mice. Gastroenterology 147 (6), pp. 1363 - 1377 (2014)

Kumar, H.; Lund, R.; Laiho, A.; Lundelin, K.; Ley, R.; Isolauri, E.; Salminen, S.: Gut microbiota as an epigenetic regulator: pilot study based on whole-genome methylation analysis. mBio 5 (6), pp. e02113 - e02114 (2014)

Leifer, C.; McConkey, C.; Li, S.; Chassaing, B.; Gewirtz, A.; Ley, R.: Linking genetic variation in human Toll-like receptor 5 genes to the gut microbiome's potential to cause inflammation. Immunology Letters 162 (2), pp. 3 - 9 (2014)

Goodrich, J.; Waters, J.; Poole, A.; Sutter, J.; Koren, O.; Blekhman, R.; Beaumont, M.; van Treuren, W.; Knight, R.; Bell, J. et al.; Spector, T.; Clark, A.; Ley, R.: Human genetics shape the gut microbiome. Cell 159 (4), pp. 789 - 799 (2014)

Huttenhower, C.; Knight, R.; Brown, C.; Caporaso, J.; Clemente, J.; Gevers, D.; Franzosa, E.; Kelley, S.; Knights, D.; Ley, R. et al.; Mahurkar, A.; Ravel, J.; Scientists for Advancement of Microbiome Research; White, O.: Advancing the microbiome research community. Cell 159 (2), pp. 227 - 230 (2014)

Goodrich, J.; Di Rienzi, S.; Poole, A.; Koren, O.; Walters, W.; Caporaso, J.; Knight, R.; Ley, R.: Conducting a microbiome study. Cell 158 (2), pp. 250 - 262 (2014)

Ji, Y.; Sun, S.; Goodrich, J.; Kim, H.; Poole, A.; Duhamel, G.; Ley, R.; Qi, L.: Diet-induced alterations in gut microflora contribute to lethal pulmonary damage in TLR2/TLR4-deficient mice. Cell Reports 8 (1), pp. 137 - 149 (2014)

Perez-Muñoz, M.; Bergstrom, K.; Peng, V.; Schmaltz, R.; Jimenez-Cardona, R.; Marsteller, N.; McGee, S.; Clavel, T.; Ley, R.; Fu, X. et al.; Xia, L.; Peterson, D.: Discordance between changes in the gut microbiota and pathogenicity in a mouse model of spontaneous colitis. Gut Microbes 5 (3), pp. 286 - 295 (2014)

Ley, R.: Harnessing microbiota to kill a pathogen: the sweet tooth of Clostridium difficile. Nature Medicine 20 (3), pp. 248 - 249 (2014)

Petschow, B.; Doré, J.; Hibberd, P.; Dinan, T.; Reid, G.; Blaser, M.; Cani, P.; Degnan, F.; Foster, J.; Gibson, G. et al.; Hutton, J.; Klaenhammer, T.; Ley, R.; Nieuwdorp, M.; Pot, B.; Relman, D.; Serazin, A.; Sanders, M.: Probiotics, prebiotics, and the host microbiome: the science of translation. Annals of the New York Academy of Sciences 1306 (1), pp. 1 - 17 (2013)

Cullender, T.; Chassaing, B.; Janzong, A.; Kumar, K.; Muller, C.; Werner, J.; Angenent, L.; Bell, M.; Hay, A.; Peterson, D. et al.; Walter, J.; Vijay-Kumar, M.; Gewirtz, A.; Ley, R.: Innate and adaptive immunity interact to quench microbiome flagellar motility in the gut. Cell Host & Microbe 14 (5), pp. 571 - 581 (2013)

Di Rienzi, S.; Sharon, I.; Wrighton, K.; Koren, O.; Hug, L.; Thomas, B.; Goodrich, J.; Bell, J.; Spector, T.; Banfield, J. et al.; Ley, R.: The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria. eLife 2, e01102 (2013)

Pfeiffer, J.; Ley, R.: Exploring the maize rhizosphere microbiome in the field: A glimpse into a highly complex system. Communicative & Integrative Biology 6 (5), e25177 (2013)