Publications

Denoeud, F.; Godfroy, O.; Cruaud, C.; Heesch, S.; Nehr, Z.; Tadrent, N.; Couloux, A.; Brillet-Guéguen, L.; Delage, L.; Mckeown, D. et al.; Motomura, T.; Sussfeld, D.; Fan, X.; Mazéas, L.; Terrapon, N.; Barrera-Redondo, J.; Petroll, R.; Reynes, L.; Choi, S.-W.; Jo, J.; Uthanumallian, K.; Bogaert, K.; Duc, C.; Ratchinski, P.; Lipinska, A.; Noel, B.; Murphy, E.; Lohr, M.; Khatei, A.; Hamon-Giraud, P.; Vieira, C.; Avia, K.; Akerfors, S.; Akita, S.; Badis, Y.; Barbeyron, T.; Belcour, A.; Berrabah, W.; Blanquart, S.; Bouguerba-Collin, A.; Bringloe, T.; Cattolico, R.; Cormier, A.; Cruz de Carvalho, H.; Dallet, R.; De Clerck, O.; Debit, A.; Denis, E.; Destombe, C.; Dinatale, E.; Dittami, S.; Drula, E.; Faugeron, S.; Got, J.; Graf, L.; Groisillier, A.; Guillemin, M.-L.; Harms, L.; Hatchett, W.; Henrissat, B.; Hoarau, G.; Jollivet, C.; Jueterbock, A.; Kayal, E.; Knoll, A.; Kogame, K.; Le Bars, A.; Leblanc, C.; Le Gall, L.; Ley, R.; Liu, X.; LoDuca, S.; Lopez, P.; Lopez, P.; Manirakiza, E.; Massau, K.; Mauger, S.; Mest, L.; Michel, G.; Monteiro, C.; Nagasato, C.; Nègre, D.; Pelletier, E.; Phillips, N.; Potin, P.; Rensing, S.; Rousselot, E.; Rousvoal, S.; Schroeder, D.; Scornet, D.; Siegel, A.; Tirichine, L.; Tonon, T.; Valentin, K.; Verbruggen, H.; Weinberger, F.; Wheeler, G.; Kawai, H.; Peters, A.; Yoon, H.; Hervé, C.; Ye, N.; Bapteste, E.; Valero, M.; Markov, G.; Corre, E.; Coelho, S.; Wincker, P.; Aury, J.-M.; Cock, J.: Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems. Cell 187 (24), pp. 6943 - 6965 (2024)

Mazéas, L.; Bouguerba-Collin, A.; Cock, J.; Denoeud, F.; Godfroy, O.; Brillet-Guéguen , L.; Barbeyron, T.; Lipinska, A.; Delage, L.; Corre, E. et al.; Drula, E.; Henrissat, B.; Czjzek, M.; Terrapon, N.; Hervé, C.: Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history. BMC Genomics 25 (1), 950 (2024)

Luthringer, R.; Raphalen, M.; Guerra, C.; Colin, S.; Martinho, C.; Zheng, M.; Hoshino, M.; Badis, Y.; Lipinska, A.; Haas, F. et al.; Barrera-Redondo, J.; Alva, V.; Coelho, S.: Repeated co-option of HMG-box genes for sex determination in brown algae and animals. Science 283 (6689), eadk5466 (2024)

Borg, M.; Krueger-Hadfield, S.; Destombe, C.; Collén, J.; Lipinska, A.; Coelho, S.: Red macroalgae in the genomic era. New Phytologist 240 (2), pp. 471 - 488 (2023)

Reifová, R.; Ament-Velásquez, S.; Bourgeois, Y.; Coughlan, J.; Kulmuni, J.; Lipinska, A.; Okude, G.; Stevison, L.; Yoshida, K.; Kitano, J.: Mechanisms of Intrinsic Postzygotic Isolation: From Traditional Genic and Chromosomal Views to Genomic and Epigenetic Perspectives. Cold Spring Harbor Perspectives in Biology 15 (10), a041607 (2023)

Molinier, C.; Lenormand, T.; Haag, C.: No recombination suppression in asexually produced males of Daphnia pulex. Evolution: international journal of organic evolution 77 (9), qpad114, pp. 1987 - 1999 (2023)

Lipinska, A.; Krueger-Hadfield, S.; Godfroy, O.; Dittami, S.; Ayres-Ostrock, L.; Bonthond, E.; Brillet-Guéguen, L.; Coelho, S.; Corre, E.; Cossard, G. et al.; Destombe, C.; Epperlein, P.; Faugeron, S.; Ficko-Blean, E.; Beltrán, J.; Lavaut, E.; Le Bars, A.; Marchi, F.; Mauger, S.; Michel, G.; Potin, P.; Scornet, D.; Sotka, E.; Weinberger, F.; Cabral de Oliveira, M.; Guillemin, M.-L.; Plastino, E.; Valero, M.: The Rhodoexplorer platform for red algal genomics and whole genome assemblies for several Gracilaria species. Genome Biology and Evolution 17 (7), evad124 (2023)

Krasovec, M.; Hoshino, M.; Zheng, M.; Lipinska, A.; Coelho, S.: Low spontaneous mutation rate in complex multicellular eukaryotes with a haploid-diploid life cycle. Molecular Biology and Evolution 40 (6), msad105 (2023)

Hatchett, W.; Jueterbock, A.; Kopp, M.; Coyer, J.; Coelho, S.; Hoarau, G.; Lipinska, A.: Evolutionary dynamics of sex-biased gene expression in a young XY system: Insights from the brown alga genus Fucus. New Phytologist 238 (1), pp. 422 - 437 (2023)

Cossard, G.; Godfroy, O.; Nehr, Z.; Cruaud, C.; Cock, J.; Lipinska, A.; Coelho, S.: Selection drives the evolution of convergent gene expression changes during transitions to co-sexuality in haploid sexual systems. Nature Ecology & Evolution 6 (5), pp. 579 - 589 (2022)

Gueno, J.; Borg, M.; Bourdareau, S.; Cossard, G.; Godfroy, O.; Lipinska, A.; Tirichine, T.; Cock, J.; Coelho, S.: Chromatin landscape associated with sexual differentiation in a UV sex determination system. Nucleic Acids Research 50 (6), gkac145, pp. 3307 - 3322 (2022)

Müller, D.; Gaschet, E.; Godfroy, O.; Gueno, J.; Cossard, G.; Kunert, M.; Peters, A.; Westermeier, R.; Boland, W.; Cock, J. et al.; Lipinska, A.; Coelho, S.: A partially sex-reversed giant kelp sheds light into the mechanisms of sexual differentiation in a UV sexual system. New Phytologist 232 (1), pp. 252 - 263 (2021)

Lipinska, A.; Cossard, G.; Epperlein, P.; Krueger, S.; Godfroy, O.; Ayres, L.; Mauger, S.; Scornet, D.; Marchi, F.; Lavaut, E. et al.; Destombe, C.; Plestino, E.; Oliveira, M.; Barrera-Redondo, J.; Guillemin, M.; Valero, M.; Coelho, S.: Scarlet tide: the first report of sex chromosomes in red algae. In European Journal of Phycology, 59 (Supplement 1), p. S101. 8th European Phycological Congress (EPC 2023): ”Scientific Opportunities for a Global Algal Revolution“, Brest, France, August 20, 2023 - August 26, 2023. Cambridge University Press, Cambridge [England] (2024)

Ratchinski, P.; Godfroy, O.; Lipinska, A.; Bogaert, K.; Scornet, D.; Dartevelle, L.; Peters, A.; Cruaud, S.; Cock, J.: Developmental and evolutionary surveys of gene expression during brown algal life cycles. In European Journal of Phycology, 59 (Supplement 1), p. S105. 8th European Phycological Congress (EPC 2023): ”Scientific Opportunities for a Global Algal Revolution“, Brest, France, August 20, 2023 - August 26, 2023. Cambridge University Press, Cambridge [England] (2024)

Brillet-Guéguen, L.; Wörtwein, T.; Le Bars, A.; Lipinska, A.; Krueger-Hadfield, S.; Godfroy, O.; Dittami, S.; Corre, E.: The Rhodoexplorer Genome Database: a Multi-Scale Genomic and Transcriptomic Data Resource for the Red Algae. In Les Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM 2023), p. 286. Les Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM 2023), June 27, 2023 - June 30, 2023. (2023)

Lipinska, A.; Barrera-Redondo, J.; Cossard, G.; Epperlein, P.; Godfroy, O.; Guillemin, M.-L.; Krueger-Hadfield, S.; Marchi, F.; Mauger, S.; Oliveira, M. et al.; Ostrock, L.; Plastino, E.; Scornet, D.; Valero, M.; Coelho, S.: Scarlet tide: the first report of sex chromosomes in red algae. In 56th Population Genetics Group Meeting (PopGroup 56), p. 3. 56th Population Genetics Group Meeting (PopGroup 56), London, UK, January 04, 2023 - January 06, 2023. (2023)

Molinier, C.; Haag, C.; Lenormand, T.: Asexuality is not faithfully transmitted by contagion in Daphnia pulex. In 56th Population Genetics Group Meeting (PopGroup 56), p. 18. 56th Population Genetics Group Meeting (PopGroup 56), London, UK, January 04, 2023 - January 06, 2023. (2023)

Lipinska, A.; Toda, N.; Godfroy, O.; Baudry, L.; Marbouty, M.; Koszul, R.; Heesch, S.; Nehr, Z.; Panaud, O.; Peters, A. et al.; Cock, J.; Coelho, S.: Sex chromosomes evolution: New insights from brown algae. In AlgaeEurope 2021, pp. 128 - 129. AlgaeEurope 2021, December 07, 2021 - October 10, 2021. (2021)

Wörtwein, T.: A web-based toolkit for protein design. European RosettaCon 2024: Knowledge Transfer for Modern Protein Modeling and Design, Copenhagen, Denmark (2024)

Brillet-Guéguen, L.; Wörtwein, T.; Le Bars, A.; Lipinska, A.; Krueger- Hadfield, S.; Godfroy, O.; Dittami, S.; Corre, E.: The Phaeoexplorer Genome Database: a Multi-Scale Genomic and Transcriptomic Data Resource for the Brown Algae. 8th European Phycological Congress (EPC 2023): ”Scientific Opportunities for a Global Algal Revolution“, Brest, France (2024)