Publications of A Gautam

Xian, W.; Bezrukov, I.; Bao, Z.; Vorbrugg, S.; Gautam, A.; Weigel, D.: TIPPo: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with High-Fidelity Data. Molecular Biology and Evolution 42 (1), msae247 (2025)

Sharma, A.; Sharma, G.; Gao, Z.; Li, K.; Li, M.; Wu, M.; Kim, C.; Che, Y.; Gautam, A.; Choi, H. et al.; Kim, J.; Kwak, J.-M.; Lam, S.; Choi, G.; Paul, S.; Feng, Y.; Kang, K.; Im, S.-H.; Rudra , D.: Glut3 promotes cellular O-GlcNAcylation as a distinctive tumor-supportive feature in Treg cells. Cellular & Molecular Immunology 21 (12), pp. 1474 - 1490 (2024)

Chandel, S.; Bhattacharya, A.; Gautam, A.; Zeng, W.; Alka, O.; Sachsenberg, T.; Gupta, G.; Narang, R.; Ravichandiran, V.; Singh, R.: Investigation of the anti-cancer potential of epoxyazadiradione in neuroblastoma: experimental assays and molecular analysis. Journal of Biomolecular Structure and Dynamics 42 (21), pp. 11377 - 11395 (2024)

Dey, D.; Chakravarti, R.; Bhattacharjee, O.; Majumder, S.; Chaudhuri, D.; Ahmed, K.; Roy, D.; Bhattacharya, B.; Arya, M.; Gautam, A. et al.; Singh, R.; Gupta, R.; Ravichandiran, V.; Chattopadhyay, D.; Ghosh, A.; Giri, K.; Roy, S.; Ghosh, D.: 2.5A mechanistic study on the tolerance of PAM distal end mismatch by SpCas9. Journal of Biological Chemistry 300 (7), 107439 (2024)

Dey, D.; Chakravarti, R.; Bhattacharjee, O.; Majumder, S.; Chaudhuri, D.; Ahmed, K.; Roy, D.; Bhattacharya, B.; Arya, M.; Gautam, A. et al.; Singh, R.; Gupta, R.; Ravichandiran, V.; Chattopadhyay, D.; Ghosh, A.; Giri, K.; Roy, S.; Ghosh, D.: A mechanistic study on the tolerance of PAM distal end mismatch by SpCas9. Journal of Biological Chemistry 300 (7), 107439 (2024)

Kar, A.; Ghosh, P.; Gautam, A.; Chowdhury, S.; Basak, D.; Sarkar, I.; Bhoumik, A.; Barman, S.; Chakraborty, P.; Mukhopadhyay, A. et al.; Mehrotra, S.; Ganesan, S.; Paul, S.; Chatterjee, S.: CD38-RyR2 axis-mediated signaling impedes CD8+ T cell response to anti-PD1 therapy in cancer. PNAS 121 (11), e2315989121 (2024)

Gautam, A.; Bhowmik, D.; Basu, S.; Zeng, W.; Lahiri, H.; Huson, D.; Paul, S.: Microbiome Metabolome Integration Platform (MMIP): a web-based platform for microbiome and metabolome data integration and feature identification. Briefings in Bioinformatics 24 (6), bbad325 (2023)

Sahana, S.; Gautam, A.; Singh, R.; Chandel, S.: A recent update on development, synthesis methods, properties and application of natural products derived carbon dots. Natural Products and Bioprospecting 13 (1), 51 (2023)

Gautam, P.; Bisht, P.; Gautam, A.; Das Gupta, G.; Singh, R.; Verma, S.: A comprehension on structure guided alignment dependent 3D-QSAR modelling, and molecular dynamics simulation on 2,4-thiazolidinediones as aldose reductase inhibitors for the management of diabetic complications. Journal of Biomolecular Structure and Dynamics Epub ahead (2023)

Zeng, W.; Gautam, A.; Huson, D.: MuLan-Methyl: Multiple Transformer-based Language Models for Accurate DNA Methylation Prediction. GigaScience 12, giad054 (2023)

Gautam, A.; Zeng, W.; Huson, D.: MeganServer: facilitating interactive access to metagenomic data on a server. Bioinformatics 39 (3), btad105 (2023)

Chakraborty, M.; Gautam, A.; Das, O.; Masid, A.; Bhaumik, M.: Prenatal arsenic exposure stymies gut butyrate production and enhances gut permeability in post natal life even in absence of arsenic deftly through miR122-Occludin pathway. Toxicology Letters 374, pp. 19 - 30 (2023)

Das, O.; Kundu, J.; Ghosh, A.; Gautam, A.; Ghosh, S.; Chakraborty, M.; Masid, A.; Gauri, S.; Mitra, D.; Dutta, M. et al.; Mukherjee, B.; Sinha, S.; Bhaumik, M.: AUF-1 knockdown in mice undermines gut microbial butyrate-driven hypocholesterolemia through AUF-1–Dicer-1–mir-122 hierarchy. Frontiers in Cellular and Infection Microbiology 12, 1011386 (2022)

Zeng, W.; Gautam, A.; Huson, D.: DeepToA: An Ensemble Deep-Learning Approach to Predicting the Theater of Activity of a Microbiome. Bioinformatics 38 (20), btac584, pp. 4670 - 4676 (2022)

Singh, R.; Chandel, S.; Ghosh, A.; Matta, T.; Gautam, A.; Bhattacharya, A.; Babu, S.; Sukla, S.; Nag, D.; Ravichandiran, V. et al.; Roy, S.; Ghosh, D.: Glucogallin Attenuates the LPS-Induced Signaling in Macrophages and Protects Mice against Sepsis. International Journal of Molecular Sciences 23 (19), 11254 (2022)

Chowdhury, S.; Kar, A.; Bhowmik, D.; Gautam, A.; Basak, D.; Sarkar, I.; Ghosh, P.; Sarkar, D.; Deka, A.; Chakraborty, P. et al.; Mukhopadhyay, A.; Mehrotra, S.; Basak, S.; Paul, S.: Intracellular acetyl CoA potentiates the therapeutic efficacy of anti-tumor CD8+ T cells. Cancer Research 82 (14), pp. 2640 - 2655 (2022)

Chakravarti, R.; Kumar Lenka , S.; Gautam, A.; Singh, R.; Ravichandiran, V.; Roy, S.; Ghosh, D.: A Review on CRISPR-Mediated Epigenome Editing: A Future Directive for Therapeutic Management of Cancer. Current Drug Targets 23 (8), pp. 836 - 853 (2022)

Singh, R.; Chandel, S.; Ghosh, A.; Gautam, A.; Huson, D.; Ravichandiran, V.; Ghosh, D.: Easy efficient HDR-based targeted knock-in in Saccharomyces cerevisiae genome using CRISPR-Cas9 system. Bioengineered 13 (6), pp. 14857 - 14871 (2022)

Fiori da Silva, G.; Gautam, A.; Silveira Duarte, I.; Palladino Delforno, T.; Delforno, T.; Maia de Oliveira, V.; Huson, D.: Interactive analysis of biosurfactants in fruit-waste fermentation samples using BioSurfDB and MEGAN. Scientific Reports 12, 7769 (2022)

Gautam, A.; Felderhoof, H.; Bağci, C.; Huson, D.: Using AnnoTree to Get More Assignments, Faster, in DIAMOND+MEGAN Microbiome Analysis. mSystems 7 (1), e0140821 (2022)