Publications of A Gautam

Ghosh, A.; Kar, P.; Gautam, A.; Gupta, R.; Singh, R.; Chakravarti, R.; Ravichandiran, V.; Dastidar, S.; Ghosh, D.; Roy, S.: An insight into SARS-CoV-2 structure, pathogenesis, target hunting for drug development and vaccine initiatives. RSC Medicinal Chemistry 13 (6), pp. 647 - 675 (2022)

Chandel, S.; Singh, R.; Gautam, A.; Ravichandiran, V.: Screening of Azadirachta indica phytoconstituents as GSK-3β inhibitor and its implication in neuroblastoma: molecular docking, molecular dynamics, MM-PBSA binding energy, and in-vitro study. Journal of Biomolecular Structure and Dynamics 40 (23), pp. 12827 - 12840 (2021)

Singh, R.; Gautam, A.; Chandel, S.; Sharma, V.; Ghosh, A.; Dey, D.; Roy, S.; Ravichandiran, V.; Ghosh, D.: Computational screening of FDA approved drugs of fungal origin that may interfere with SARS-CoV-2 spike protein activation, viral RNA replication, and post-translational modification: a multiple target approach. In Silico Pharmacology 9 (1), 27 (2021)

Weng, C.; Gautam, A.; Huson, D.: On the Application of Advanced Machine Learning Methods to Analyze Enhanced, Multimodal Data from Persons Infected with COVID-19. Computation 9, 4 (2021)

Gautam, A.; Zeng, W.; Huson, D.: DIAMOND + MEGAN Microbiome Analysis. In: Metagenomic Data Analysis, pp. 107 - 131 (Ed. Mitra, S.). Humana Press, NewYork, NY, USA (2023)

Kumar, K.; Bhowmik, D.; Mandloi, S.; Gautam, A.; Lahiri, A.; Biswas, N.; Paul, S.; Chakrabarti, S.: Integrating Multi-Omics Data to Construct Reliable Interconnected Models of Signaling, Gene Regulatory, and Metabolic Pathways. In: Computational Modeling of Signaling Networks, pp. 139 - 151 (Ed. Nguyen, L.). Humana, New York, NY, USA (2023)

Botta, C.; Tsoureki, D.; Gautam, A.; Patz, S.; Pissaridi, K.; Ferrocino, I.; Cocolin, L.; Huson, D.; Rantsiou, K.: The pros and cons of tracking the microbial contamination in infant food processing chain through amplicon sequencing and metagenomics. In Food System Microbiomes 2024, S5-ST03, p. 50. Food System Microbiomes 2024, Torino, Italy, May 14, 2024 - May 17, 2024. (2024)

Gautam, A.: Using AnnoTree to Get More Assignments, Faster, in DIAMOND+MEGAN Microbiome Analysis. In 31st Annual Intelligent Systems For Molecular Biology and the 22nd Annual European Conference on Computational Biology (ISMB/ECCB 2023). 31st Annual Intelligent Systems For Molecular Biology and the 22nd Annual European Conference on Computational Biology (ISMB/ECCB 2023), Lyon, France, July 23, 2023 - July 27, 2023. (2023)

Patz, S.; Gautam, A.; Becker, M.; Ruppel, S.; Huson, D.: From application of the plant growth-promoting traits ontology towards a sustainable plant production. In Molecular Plant-Microbe Interactions, 32 (3 Supplement), p. 4. 2021 IS-MPMI Congress: Plant–Microbe Interactions in the Environment: Navigating a Complex World, December 01, 2021 - December 02, 2021. APS Press, St. Paul, MN, USA (2021)

Huson, D.; Gautam, A.; Zeng, W.: Tutorial IP6: Interactive microbiome analysis using DIAMOND+MEGAN. 31st Conference on Intelligent Systems for Molecular Biology and 22nd European Conference on Computational Biology (ISMB/ECCB 2023), Lyon, France (2023)

Gautam, A.; Bhowmik, D.; Basu, S.; Zeng, W.; Lahiri, A.; Huson, D.; Paul, S.: Microbiome Metabolome Integration Platform (MMIP): a web-based platform for microbiome and metabolome data integration and feature identification. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany (2023)

Xian, W.; Bezrukov, I.; Bao, Z.; Vorbrugg, S.; Gautam, A.; Weigel, D.: TIPP_plastid: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with HiFi Data. (submitted)

Patz, S.; Rauh, M.; Gautam, A.; Huson, D.: mgPGPT: Metagenomic analysis of plant growth-promoting traits. (submitted)

Gautam, A.; Zeng, W.; Huson, D.: Megan Server: facilitating interactive access to metagenomic data on a server. (submitted)

Das, O.; Kundu, J.; Ghosh, A.; Gautam, A.; Ghosh, S.; Chakraborty, M.; Masid, A.; Gauri, S.; Mitra, D.; Dutta, M. et al.; Mukherjee, B.; Sinha, S.; Bhaumik, M.: AUF-1 knock down in mice overarches butyrate driven hypo-cholesteraemia by conjuring AUF-1-Dicer-1-miR122 hierarchy. (submitted)

Patz, S.; Gautam, A.; Becker, M.; Ruppel, S.; Rodríguez‐Palenzuela, P.; Huson, D.: PLaBAse: A comprehensive web resource for analyzing the plant growth-promoting potential of plant-associated bacteria. (submitted)