Publications of ND Youngblut

de la Cuesta-Zuluaga, J.; Ley, R.; Youngblut, N.: Struo: a pipeline for building custom databases for common metagenome profilers. Bioinformatics 36 (7), pp. 2314 - 2315 (2020)

Ruaud, A.; Esquivel-Elizondo, S.; de la Cuesta-Zuluaga, J.; Waters, J.; Angenent, L.; Youngblut, N.; Ley, R.: Syntrophy via Interspecies H2 Transfer between Christensenella and Methanobrevibacter Underlies Their Global Cooccurrence in the Human Gut. mBio 11 (1), e03235-19 (2020)

Barnett, S.; Youngblut, N.; Buckley, D.: Soil characteristics and land-use drive bacterial community assembly patterns. FEMS Microbiology Ecology 96 (1), fiz194 (2020)

Youngblut, N.; Reischer, G.; Walters, W.; Schuster, N.; Walzer, C.; Stalder, G.; Ley, R.; Farnleiter, A.: Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades. Nature Communications 10, 2200 (2019)

Poole, A.; Goodrich, J.; Youngblut, N.; Luque, G.; Ruaud, A.; Sutter, J.; Waters, J.; Shi, Q.; El-Hadidi, M.; Johnson, L. et al.; Bar, H.; Huson, D.; Booth, J.; Ley, R.: Human Salivary Amylase Gene Copy Number Impacts Oral and Gut Microbiomes. Cell Host & Microbe 25 (4), pp. 553 - 564 (2019)

Moreno-Gallego, J.; Chou, S.-P.; Di Rienzi, S.; Goodrich, J.; Spector, T.; Bell, J.; Youngblut, N.; Hewson, I.; Reyes, A.; Ley, R.: Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins. Cell Host & Microbe 25 (2), pp. 261 - 272 (2019)

Walters, W.; Jin, Z.; Youngblut, N.; Wallace, J.; Sutter, J.; Zhang, W.; González-Peña, A.; Peiffer, J.; Koren, O.; Shi, Q. et al.; Knight, R.; Glavina Del Rio, T.; Tringe, S.; Buckler, E.; Dangl, J.; Ley, R.: Large-scale replicated field study of maize rhizosphere identifies heritable microbes. Proceedings of the National Academy of Sciences of the United States of America 115 (28), pp. 7368 - 7373 (2018)

Emmett, B.; Youngblut, N.; Buckley, D.; Drinkwater, L.: Plant Phylogeny and Life History Shape Rhizosphere Bacterial Microbiome of Summer Annuals in an Agricultural Field. Frontiers in Microbiology 8, 2414 (2017)

Bautista, M.; Black, J.; Youngblut, N.; Whitaker, R.: Differentiation and Structure in Sulfolobus islandicus Rod-Shaped Virus Populations. Viruses 9 (5), 120 (2017)

Barnett, S.; Youngblut, N.; Buckley, D.: Data Analysis for DNA Stable Isotope Probing Experiments Using Multiple Window High-Resolution SIP. In: Methods in Molecular Biology. Springer, US (2019)

Huus, K.; Esen, M.; μ. Study Group; Dauser, S.; Loum, S.; Youngblut, N.; Tyakht, A.; Ley, R.: Vaccine-induced fevers are associated with diet and the gut microbiome. In 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), FT 14, p. 21. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany, October 11, 2023 - October 13, 2023. (2023)

Clasen, S.; Bell, M.; Borbón, A.; Lee, D.-H.; Henseler, Z.; de la Cuesta-Zuluaga, J.; Parys, K.; Zou, J.; Wang, Y.; Altmannova, V. et al.; Youngblut, N.; Weir, J.; Gewirtz, A.; Belkhadir, Y.; Ley, R.: Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5. In Cell Symposia: Infection Biology in the Age of the Microbiome, ST.01. Cell Symposia: Infection Biology in the Age of the Microbiome, Paris, France, June 07, 2023 - June 09, 2023. (2023)

Suzuki, T.; Fitzstevens, L.; Enav, H.; Schmidt, V.; Youngblut, N.; Mbong, M.; Ley, R.: Codiversification of the gut microbiota with humans. In Virtual Evolution 2021, 482. Virtual Evolution 2021, June 21, 2021 - June 25, 2021. (2021)

Fitzstevens, L.; Liu, X.; Ruaud, A.; Schmidt, V.; Mbong Ngwese, M.; Youngblut, N.; Rauch, J.; Suzuki, T.; Ha, N.; Arzamasov, A. et al.; Rodionov, D.; Pfister, N.; Thams, N.; Adegbite, B.; Zinsou, J.; Esen, M.; Velavan, T.; Adegnika, A.; Song, L.; Kremsner, P.; Ostermann, A.; Tyakht, A.; Ley, R.: Bifidobacteria compensate for genotype in lactose tolerance. 75th Mosbacher Kolloquium "The Microbiome - from Understanding to Modulation", Mosbach, Germany (2024)

Fitzstevens, L.; Liu, X.; Ruaud, A.; Schmidt, V.; Mbong, M.; Rauch, J.; Nguyen Thu, H.; Adegbite, B.; Zinsou, J.; Esen, M. et al.; Velavan, T.; Adegnika, A.; Song, L.; Kremsner, P.; Youngblut, N.; Tyakht, A.; Ley, R.: Bifidobacteria confer microbiome-acquired lactose tolerance in genetically lactase-non persistent humansrts. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany (2023)

Liu, Y.; Tyakht, A.; Youngblut, N.; Ley, R.: Determining the ecological roles of Methanobrevibacter smithii adhesins-like-proteins (ALPs) in the gut. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany (2023)

Tyakht, A.; Youngblut, N.; Dauser, S.; Knight, R.; Dorrenstein, P.; Estaki, M.; Victor, T.; Kosciólek, T.; Paulus, M.; Spector, T. et al.; Ley, R.: Unveiling reproducible gut microbiome alterations in anxiety: enhanced aromatic amino acid metabolism across cohorts. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany (2023)

Huus, K.; Esen, M.; Gabor, J.; Gaile, J.; Fleischmann, W.; Smeenk, G.; Krauser, A.; Siebner, A.; Flügge, J.; Roggendorf, E. et al.; Allgayer De Moraes, R.; Dauser, S.; Loum, S.; Youngblut, N.; Ley, R.: Fever-microbiome interactions during human vaccination: The µHEAT study. Cell Symposia: Infection Biology in the Age of the Microbiome, Paris, France (2023)

Ruaud, A.; Pfister, N.; Ley, R.; Youngblut, N.: Enhancing the application of machine learning models to microbiome data with endoR. Cell Symposia: Infection Biology in the Age of the Microbiome, Paris, France (2023)

de la Cuesta, J.; Youngblut, N.; Escobar, J.; Ley, R.: Obesity Is the Main Driver of Functional Alterations of the Gut Microbiome in Cardiometabolic Disease. World Microbe Forum 2021 (2021)