Publications of J de la Cuesta-Zuluaga

Salazar-Jaramillo, L.; de la Cuesta-Zuluaga, J.; Chica, L.; Cadavid , M.; Ley, R.; Reyes, A.; Escobar, J.: Gut microbiome diversity within Clostridia is negatively associated with human obesity. mSystems 9 (8), e0062724 (2024)

de la Cuesta Zuluaga, J.; Huus, K.; Youngblut, N.; Escobar, J.; Ley, R.: Obesity is the main driver of altered gut microbiome functions in the metabolically unhealthy. Gut Microbes 15 (2), 2246634 (2023)

Clasen, S.; Bell, M.; Borbón, A.; Lee, D.-H.; Henseler, Z.; de la Cuesta-Zuluaga, J.; Parys, K.; Zou, J.; Wang, Y.; Altmannova, V. et al.; Youngblut, N.; Weir, J.; Gewirtz, A.; Belkhadir, Y.; Ley, R.: Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5. Science Immunology 8 (79), eabq7001 (2023)

Youngblut, N.; de la Cuesta-Zuluaga, J.; Ley, R.: Incorporating genome-based phylogeny and functional similarity into diversity assessments helps to resolve a global collection of human gut metagenomes. Environmental Microbiology 24 (9), pp. 3966 - 3984 (2022)

Liu, X.; Sutter, J.; de la Cuesta-Zuluaga, J.; Waters, J.; Youngblut, N.; Ley, R.: Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis. International Journal of Systematic and Evolutionary Microbiology 71 (4), 004774 (2021)

de la Cuesta-Zuluaga, J.; Spector, T.; Youngblut, N.; Ley, R.: Genomic Insights into Adaptations of Trimethylamine-Utilizing Methanogens to Diverse Habitats, Including the Human Gut. mSystems 6 (1), e00939-20 (2021)

Youngblut, N.; de la Cuesta-Zuluaga, J.; Reischer, G.; Dauser, S.; Schuster, N.; Walzer, C.; Stalder, G.; Farnleitner, A.; Ley, R.: Large-Scale Metagenome Assembly Reveals Novel Animal-Associated Microbial Genomes, Biosynthetic Gene Clusters, and Other Genetic Diversity. mSystems 5 (6), e01045-20 (2020)

Guzmán-Castañeda, S.; Ortega-Vega, E.; de la Cuesta-Zuluaga, J.; Velásquez-Mejía, E.; Rojas, W.; Bedoya, G.; Escobar, J.: Gut microbiota composition explains more variance in the host cardiometabolic risk than genetic ancestry. Gut Microbes 11 (2), pp. 191 - 204 (2020)

de la Cuesta-Zuluaga, J.; Ley, R.; Youngblut, N.: Struo: a pipeline for building custom databases for common metagenome profilers. Bioinformatics 36 (7), pp. 2314 - 2315 (2020)

Ruaud, A.; Esquivel-Elizondo, S.; de la Cuesta-Zuluaga, J.; Waters, J.; Angenent, L.; Youngblut, N.; Ley, R.: Syntrophy via Interspecies H2 Transfer between Christensenella and Methanobrevibacter Underlies Their Global Cooccurrence in the Human Gut. mBio 11 (1), e03235-19 (2020)

de la Cuesta-Zuluaga, J.; Kelley, S.; Chen, Y.; Escobar, J.; Mueller, N.; Ley, R.; McDonald, D.; Huang, S.; Swafford, A.; Knight, R. et al.; Thackray, V.: Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults. mSystems 4 (4), e00261-19 (2019)

de la Cuesta-Zuluaga, J.; Corrales-Agudelo, V.; Velásquez-Mejía, E.; Carmona, J.; Arbad, J.; Escobar, J.: Gut microbiota is associated with obesity and cardiometabolic disease in a population in the midst of Westernization. Scientific Reports 8, 11356 (2018)

Velásquez-Mejía, E.; de la Cuesta-Zuluaga, J.; Escobar, J.: Impact of DNA extraction, sample dilution, and reagent contamination on 16S rRNA gene sequencing of human feces. Applied Microbiology and Biotechnology 102 (1), pp. 403 - 411 (2018)

Clasen, S.; Bell, M.; Borbón, A.; Lee, D.-H.; Henseler, Z.; de la Cuesta-Zuluaga, J.; Parys, K.; Zou, J.; Wang, Y.; Altmannova, V. et al.; Youngblut, N.; Weir, J.; Gewirtz, A.; Belkhadir, Y.; Ley, R.: Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5. In Cell Symposia: Infection Biology in the Age of the Microbiome, ST.01. Cell Symposia: Infection Biology in the Age of the Microbiome, Paris, France, June 07, 2023 - June 09, 2023. (2023)

de la Cuesta, J.; Youngblut, N.; Escobar, J.; Ley, R.: Obesity Is the Main Driver of Functional Alterations of the Gut Microbiome in Cardiometabolic Disease. World Microbe Forum 2021 (2021)

de la Cuesta-Zuluaga, J.; Ley, R.; Youngblut, N.: Struo: a pipeline for building custom databases for common metagenome profilers. German Conference on Bioinformatics (GCB 2019), Heidelberg, Germany (2019)

de la Cuesta Zuluaga, J.: Insights Into the Human Gut Microbiome and its Link with Obesity and Cardiometabolic Diseases. Dissertation, 166 pp., Eberhard-Karls-Universität, Tübingen, Germany (2022)