Publications of WA Walters

Noriega Tejada, J.; Walters, W.; Wang, Y.; Kordahi, M.; Chassaing, B.; Pickard, J.; Nunez, G.; Ley, R.; Gewirtz, A.: Prevention and cure of murine C. difficile infection by a Lachnospiraceae strain. Gut Microbes 16 (1), 2392872 (2024)

Walters, W.; Ley, C.; Hastie, T.; Ley, R.; Parsonnet, J.: A modified Michaelis-Menten equation estimates growth from birth to 3 years in healthy babies in the USA. BMC Medical Research Methodology 24 (1), 27 (2024)

Daniel, N.; Wu, G.; Walters, W.; Compher , C.; Ni, J.; Delaroque, C.; Albenberg, L.; Ley, R.; Patterson, A.; Lewis, J. et al.; Gewirtz, A.; Chassaing, B.: Human intestinal microbiome determines individualized inflammatory response to dietary emulsifier carboxymethylcellulose consumption. Cellular and Molecular Gastroenterology and Hepatology 17 (2), pp. 315 - 318 (2024)

Bretin, A.; Zou, J.; Yeoh, V.; Ngo, V.; Winer, S.; Winer, D.; Reddivari, L.; Pellizzon, M.; Walters, W.; Patterson, A. et al.; Ley, R.; Chassaing, B.; Vijay-Kumar, M.; Gewirtz, A.: Psyllium Fiber Protects Against Colitis Via Activation of Bile Acid Sensor Farnesoid X Receptor. Cellular and Molecular Gastroenterology and Hepatology 15 (6), pp. 1421 - 1442 (2023)

Pinto, Y.; Frishman, S.; Turjeman, S.; Eshel, A.; Nuriel-Ohayon, M.; Shrossel, O.; Ziv, O.; Walters, W.; Parsonnet, J.; Ley, C. et al.; Johnson, E.; Kumar, K.; Schweitzer, R.; Khatib, S.; Magzal, F.; Muller, E.; Tamir, S.; Tenenbaum-Gavish, K.; Rautava, S.; Salminen, S.; Isolauri, E.; Yariv, O.; Peled, Y.; Poran, E.; Chen, R.; Hod, M.; Borenstein, E.; Ley, R.; Schwartz, B.; Louzoun, Y.; Hadar, E.; Koren, O.: Gestational diabetes is driven by microbiota-induced inflammation months before diagnosis. Gut 72 (5), gutjnl-2022-328406, pp. 918 - 928 (2023)

Walters, W.; Granados, A.; Ley, C.; Federman, S.; Stryke, D.; Santos, Y.; Haggerty, T.; Sotomayor-Gonzalez, A.; Servellita, V.; Ley, R. et al.; Parsonnet, J.; Chiu, C.: Longitudinal comparison of the developing gut virome in infants and their mothers. Cell Host & Microbe 31 (2), pp. 187 - 198 (2023)

Chassaing, B.; Compher, C.; Bonhomme, B.; Liu, Q.; Tian, Y.; Walters, W.; Nessel, L.; Delaroque, C.; Hao, F.; Gershuni, V. et al.; Chau, L.; Ni, J.; Bewtra, M.; Albenberg, L.; Bretin, A.; McKeever, L.; Ley, R.; Patterson, A.; Wu, G.; Gewirtz, A.; Lewis, J.: Randomized Controlled-Feeding Study of Dietary Emulsifier Carboxymethylcellulose Reveals Detrimental Impacts on the Gut Microbiota and Metabolome. Gastroenterology 162 (3), pp. 743 - 756 (2022)

Walters, W.; Reyes, F.; Soto, G.; Reynolds, N.; Fraser, J.; Aviles, R.; Tribble, D.; Irvin, A.; Kelley-Loughnane, N.; Gutierrez, R. et al.; Riddle, M.; Ley, R.; Goodson, M.; Simons, M.: Epidemiology and associated microbiota changes in deployed military personnel at high risk of traveler's diarrhea. PLoS One 15 (8), e0236703 (2020)

Bolyen, E.; Rideout, J.; Dillon, M.; Bokulich, N.; Abnet, C.; Al-Ghalith, G.; Alexander, H.; Alm, E.; Arumugam, M.; Asnicar, F. et al.; Bai, Y.; Bisanz, J.; Bittinger, K.; Brejnrod, A.; Brislawn, C.; Brown, C.; Callahan, B.; Caraballo-Rodríguez, A.; Chase, J.; Cope, E.; Da Silva, R.; Diener, C.; Dorrestein, P.; Douglas, G.; Durall, D.; Duvallet, C.; Edwardson, C.; Ernst, M.; Estaki, M.; Fouquier, J.; Gauglitz, J.; Gibbons, S.; Gibson, D.; Gonzalez, A.; Gorlick, K.; Guo, J.; Hillmann, B.; Holmes, S.; Holste, H.; Huttenhower, C.; Huttley, G.; Janssen, S.; Jarmusch, A.; Jiang, L.; Kaehler, B.; Kang, K.; Keefe, C.; Keim, P.; Kelley, S.; Knights, D.; Koester, I.; Kosciolek, T.; Kreps, J.; Langille, M.; Lee, J.; Ley, R.; Liu, Y.-X.; Loftfield, E.; Lozupone, C.; Maher, M.; Marotz, C.; Martin, B.; McDonald, D.; McIver, L.; Melnik, A.; Metcalf, J.; Morgan, S.; Morton, J.; Naimey, A.; Navas-Molina, J.; Nothias, L.; Orchanian, S.; Pearson, T.; Peoples, S.; Petras, D.; Preuss, M.; Pruesse, E.; Rasmussen, L.; Rivers, A.; Robeson 2nd, M.; Rosenthal, P.; Segata, N.; Shaffer , M.; Shiffer , A.; Sinha, R.; Song, S.; Spear, J.; Swafford, A.; Thompson, L.; Torres, P.; Trinh, P.; Tripathi, A.; Turnbaugh, P.; Ul-Hasan, S.; van der Hooft, J.; Vargas, F.; Vázquez-Baeza, Y.; Vogtmann, E.; von Hippel, M.; Walters, W.; Wan, Y.; Wang, M.; Warren, J.; Weber, K.; Williamson, C.; Willis, A.; Xu, Z.; Zaneveld, J.; Zhang, Y.; Zhu, Q.; Knight, R.; Caporaso, J.: Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology 37 (9), p. 1091 (2019)

Bolyen, E.; Rideout, J.; Dillon, M.; Bokulich, N.; Abnet, C.; Al-Ghalith, G.; Alexander, H.; Alm, E.; Arumugam, M.; Asnicar, F. et al.; Bai, Y.; Bisanz, J.; Bittinger, K.; Brejnrod, A.; Brislawn, C.; Brown, C.; Callahan, B.; Caraballo-Rodríguez, A.; Chase, J.; Cope, E.; Da Silva, R.; Diener, C.; Dorrestein, P.; Douglas, G.; Durall, D.; Duvallet, C.; Edwardson, C.; Ernst, M.; Estaki, M.; Fouquier, J.; Gauglitz, J.; Gibbons, S.; Gibson, D.; Gonzalez, A.; Gorlick, K.; Guo, J.; Hillmann, B.; Holmes, S.; Holste, H.; Huttenhower, C.; Huttley, G.; Janssen, S.; Jarmusch, A.; Jiang, L.; Kaehler, B.; Kang, K.; Keefe, C.; Keim, P.; Kelley, S.; Knights, D.; Koester, I.; Kosciolek, T.; Kreps, J.; Langille, M.; Lee, J.; Ley, R.; Liu, Y.-X.; Loftfield, E.; Lozupone, C.; Maher, M.; Marotz, C.; Martin, B.; McDonald, D.; McIver, L.; Melnik, A.; Metcalf, J.; Morgan, S.; Morton, J.; Naimey, A.; Navas-Molina, J.; Nothias, L.; Orchanian, S.; Pearson, T.; Peoples, S.; Petras, D.; Preuss, M.; Pruesse, E.; Rasmussen, L.; Rivers, A.; Robeson 2nd, M.; Rosenthal, P.; Segata, N.; Shaffer , M.; Shiffer , A.; Sinha, R.; Song, S.; Spear, J.; Swafford, A.; Thompson, L.; Torres, P.; Trinh, P.; Tripathi, A.; Turnbaugh, P.; Ul-Hasan, S.; van der Hooft, J.; Vargas, F.; Vázquez-Baeza, Y.; Vogtmann, E.; von Hippel, M.; Walters, W.; Wan, Y.; Wang, M.; Warren, J.; Weber, K.; Williamson, C.; Willis, A.; Xu, Z.; Zaneveld, J.; Zhang, Y.; Zhu, Q.; Knight, R.; Caporaso, J.: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology 37 (8), pp. 852 - 857 (2019)

Youngblut, N.; Reischer, G.; Walters, W.; Schuster, N.; Walzer, C.; Stalder, G.; Ley, R.; Farnleiter, A.: Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades. Nature Communications 10, 2200 (2019)

Walters, W.; Jin, Z.; Youngblut, N.; Wallace, J.; Sutter, J.; Zhang, W.; González-Peña, A.; Peiffer, J.; Koren, O.; Shi, Q. et al.; Knight, R.; Glavina Del Rio, T.; Tringe, S.; Buckler, E.; Dangl, J.; Ley, R.: Large-scale replicated field study of maize rhizosphere identifies heritable microbes. Proceedings of the National Academy of Sciences of the United States of America 115 (28), pp. 7368 - 7373 (2018)

Reddivari, L.; Veeramachaneni, D.; Walters, W.; Lozupone, C.; Palmer, J.; Hewage, M.; Bhatnagar, R.; Amir, A.; Kennett, M.; Knight, R. et al.; Vanamala, J.: Perinatal Bisphenol A Exposure Induces Chronic Inflammation in Rabbit Offspring via Modulation of Gut Bacteria and Their Metabolites. mSystems 2 (5), e00093-17 (2017)

Johnson, E.; Heaver, S.; Walters, W.; Ley, R.: Microbiome and metabolic disease: revisiting the bacterial phylum Bacteroidetes. Journal of Molecular Medicine 95 (1), pp. 1 - 8 (2017)

Singh, J.; Johnson, R.; Schlett, C.; Elassal, E.; Crawford, K.; Mor, D.; Lanier, J.; Law, N.; Walters, W.; Teneza-Mora, N. et al.; Bennett, J.; Hall, E.; Millar, E.; Ellis, M.; Merrell, D.: Multi-Body-Site Microbiome and Culture Profiling of Military Trainees Suffering from Skin and Soft Tissue Infections at Fort Benning, Georgia. mSphere 1 (5), e00232-16 (2016)

Giloteaux, L.; Goodrich, J.; Walters, W.; Levine, S.; Ley, R.; Hanson, M.: Reduced diversity and altered composition of the gut microbiome in individuals with myalgic encephalomyelitis/chronic fatigue syndrome. Microbiome 4, 30 (2016)

Goodrich, J.; Di Rienzi, S.; Poole, A.; Koren, O.; Walters, W.; Caporaso, J.; Knight, R.; Ley, R.: Conducting a microbiome study. Cell 158 (2), pp. 250 - 262 (2014)

Carvalho, F.; Koren, O.; Goodrich, J.; Johansson, M.; Nalbantoglu, I.; Aitken, J.; Su, Y.; Chassaing, B.; Walters, W.; González, A. et al.; Clemente, J.; Cullender, T.; Barnich, N.; Darfeuille-Michaud, A.; Vijay-Kumar, M.; Knight, R.; Ley, R.; Gewirtz, A.: Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice. Cell Host & Microbe 12 (2), pp. 139 - 152 (2012)

Carvalho, F.; Nalbantoglu, I.; Ortega-Fernandez, S.; Aitken, J.; Su, Y.; Koren, O.; Walters, W.; Ley, R.; Vijay-Kumar, M.; Gewirtz, A.: Interleukin-1β (IL-1β) promotes susceptibility of Toll-like receptor 5 (TLR5) deficient mice to colitis. Gut 61 (3), pp. 373 - 384 (2012)

Werner, J.; Koren, O.; Hugenholtz, P.; DeSantis, T.; Walters, W.; Caporaso, J.; Angenent, L.; Knight, R.; Ley, R.: Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys. The ISME Journal 6 (1), pp. 94 - 103 (2012)