Publications of H Ashkenazy

Saarenpää, S.; Shalev, O.; Ashkenazy, H.; Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatial metatranscriptomics resolves host-bacteria-fungi interactomes. Nature Biotechnology 42 (9), pp. 1384 - 1393 (2024)

Shalev, O.; Ashkenazy, H.; Neumann, M.; Weigel, D.: Commensal Pseudomonas protect Arabidopsis thaliana from a coexisting pathogen via multiple lineage-dependent mechanisms. The ISME Journal 16 (5), pp. 1235 - 1244 (2022)

Shalev, O.; Karasov, T.; Lundberg, D.; Ashkenazy, H.; Ayutthaya, P.; Weigel, D.: Commensal Pseudomonas strains facilitate protective response against pathogens in the host plant. Nature Ecology & Evolution 6 (4), pp. 383 - 396 (2022)

Bernhofer, M.; Dallago, C.; Karl, T.; Satagopam, V.; Heinzinger, M.; Littmann, M.; Olenyi, T.; Qiu, J.; Schütze, K.; Yachdav, G. et al.; Ashkenazy, H.; Ben-Tal, N.; Bromberg, Y.; Goldberg, T.; Kajan, L.; O'Donoghue, S.; Sander, C.; Schafferhans, A.; Schlessinger, A.; Vriend, G.; Mirdita, M.; Gawron, P.; Gu, W.; Jarosz, Y.; Trefois, C.; Steinegger, M.; Schneider, R.; Rost, R.: PredictProtein: Predicting Protein Structure and Function for 29 Years. Nucleic Acids Research 49 (W1), pp. W535 - W540 (2021)

Katz, E.; Li, J.-J.; Jaegle, B.; Ashkenazy, H.; Abrahams, S.; Bagaza, C.; Holden, S.; Pires, C.; Angelovici, R.; Kliebenstein, D.: Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe. eLife 10, e67784 (2021)

Hada-Neeman, S.; Weiss-Ottolenghi, Y.; Wagner, N.; Avram, O.; Ashkenazy, H.; Maor, Y.; Sklan, E.; Shcherbakov, D.; Pupko, T.; Gershoni, J.: Domain-Scan: Combinatorial Sero-Diagnosis of Infectious Diseases Using Machine Learning. Frontiers in immunology 11, 619896 (2021)

Barragan, A.; Collenberg, M.; Wang, J.; Lee, R.; Cher, W.; Rabanal, F.; Ashkenazy, H.; Weigel, D.; Chae, E.: A Truncated Singleton NLR Causes Hybrid Necrosis in Arabidopsis thaliana. Molecular Biology and Evolution 38 (2), pp. 557 - 574 (2021)

Chorin, A.; Masrati, G.; Kessel, A.; Narunsky, A.; Sprinzak, J.; Lahav, S.; Ashkenazy, H.; Ben-Tal, N.: ConSurf-DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins. Protein Science 29 (1), pp. 258 - 267 (2020)

Ashkenazy, H.; Shalev, O.; Karasov, T.; Lundberg, D.; Neumann, M.; Weigel, D.: The evolution of Arabidopsis thaliana-associated Pseudomonas and Sphingomonas. In SMBE 2024, p. 141. Society for Molecular Biology and Evolution Conference 2024 (SMBE 2024), Puerto Vallarta, Mexico, July 07, 2024 - July 11, 2024. (2024)

Lucke, M.; Ashkenazy, H.; Teasdale, L.; Paul, F.; Collenberg, M.; Schlegel, T.; Schwab, R.; Weigel, D.: On the relationship between alleles of the immune receptor RPP1 and its oomycete effector ligand ATR1. In 34th International Conference on Arabidopsis Research (ICAR 2024), P9-6, p. 580. 34th International Conference on Arabidopsis Research (ICAR 2024), San Diego, CA, USA, July 15, 2024 - July 19, 2024. (2024)

Roitman, S.; Ashkenazy, H.; Weigel, D.: Expanding the Plant Microbiome. In SMBE 2024, p. 417. Society for Molecular Biology and Evolution Conference 2024 (SMBE 2024), Puerto Vallarta, Mexico, July 07, 2024 - July 11, 2024. (2024)

Ashkenazy, H.; Shalev, O.; Karasov, T.; Neumann, M.; Weigel, D.: The evolution of Arabidopsis thaliana-associated Pseudomonas. In The Local Pangenome, 33, p. 81. The Local Pangenome, Alicante, Spain, October 25, 2023 - October 28, 2023. (2023)

Saarenpää, S.; Shalev, O.; Ashkenazy, H.; de Oliveira-Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatially resolved host-bacteria-fungi interactomes via spatial metatranscriptomics. In Plant & Animal Genome Conference (PAG 30). Plant & Animal Genome Conference (PAG 30), San Diego, CA, USA, January 13, 2023 - January 18, 2023. (2023)

Katz, E.; Li, J.-J.; Ashkenazy, H.; Bagaza, C.; Holden, S.; Angelovici, R.; Kliebenstein, D.: Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe. In 31st International Conference on Arabidopsis Research (ICAR 2021), p. 17. 31st International Conference on Arabidopsis Research (ICAR 2021), June 21, 2021 - June 25, 2021. (2021)

Saarenpää, S.; Shalev Skriptchak, O.; Ashkenazy, H.; Weigel, D.; Giacomello, S.: Unveiling spatial host-microbe interactions in Arabidopsis thaliana leaves by Spatial MetaTranscriptomics. In 31st International Conference on Arabidopsis Research (ICAR 2021), pp. 65 - 66. 31st International Conference on Arabidopsis Research (ICAR 2021), June 21, 2021 - June 25, 2021. (2021)

Karasov, T.; Neumann, M.; Duque, A.; Ashkenazy, H.; Weigel, D.: From the Microbiome to the Gene: Mapping the genes in a leaf microbiome responsible for strain-specific pathogenicity. In Molecular Plant-Microbe Interactions, 32 (10 Supplement), p. 238. XVIII Congress of the International Society for Molecular Plant-Microbe Interactions (IS-MPMI 2019), Glasgow, UK, July 14, 2019 - July 18, 2019. APS Press, St. Paul, MN, USA (2019)

Lucke, M.; Ashkenazy, H.; Teasdale, L.; Paul, F.; Collenberg, M.; Schlegel, T.; Shirsekar, G.; Schwab, R.; Weigel, D.: On the relationship between alleles of the immune receptor RPP1 and its oomycete effector ligand ATR1. Congress of the International Society for Molecular Plant-Microbe Interactions (IS-MPMI 2023), Providence, RI, USA (2024)

Roitman, S.; Ashkenazy, H.; Weigel, D.: The microvirome: Understanding phage-bacterial dynamics in the plant holobiont. 5th Plant Microbiome Symposium 2024, Amsterdam, The Netherlands (2024)

Saarenpää, S.; Shalev, O.; Ashkenazy, H.; de Oliveira-Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatial Metatranscriptomics Resolves Host–Bacteria–Fungi Interactomes. Plant and Animal Genome 31 Conference (PAG 2024), San Diego, CA, USA (2024)

Saarenpää, S.; Shalev, O.; Ashkenazy, H.; de Oliveira-Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatially resolved host-bacteria-fungi interactomes via spatial metatranscriptomics. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany (2023)