Publications of D Grimm

Falcke, J.; Bose, N.; Artyukhin, A.; Rödelsperger, C.; Markov, G.; Yim, J.; Grimm, D.; Claassen, M.; Panda, O.; Baccile, J. et al.; Zhang, Y.; Le, H.; Jolic, D.; Schroeder, F.; Sommer, R.: Linking Genomic and Metabolomic Natural Variation Uncovers Nematode Pheromone Biosynthesis. Cell Chemical Biology 25 (6), pp. 787 - 796 (2018)

Exposito-Alonso, M.; Becker, C.; Schuenemann, V.; Reiter, E.; Setzer, C.; Slovak, R.; Brachi, B.; Hagmann, J.; Grimm, D.; Chen, J. et al.; Busch, W.; Bergelson, J.; Ness, R.; Krause, J.; Burbano, H.; Weigel, D.: The rate and potential relevance of new mutations in a colonizing plant lineage. PLoS Genetics 14 (2), e1007155 (2018)

Togninalli, M.; Seren, U.; Meng, D.; Fitz, J.; Nordborg, M.; Weigel, D.; Borgwardt, K.; Korte, A.; Grimm, D.: The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog. Nucleic Acids Research (London) 46 (D1), pp. D1150 - D1156 (2018)

Grimm, D.; Roqueiro, D.; Salomé, P.; Kleeberger, S.; Greshake, B.; Zhu, W.; Liu, C.; Lippert, C.; Stegle, O.; Schölkopf, B. et al.; Weigel, D.; Borgwardt, K.: easyGWAS: A Cloud-Based Platform for Comparing the Results of Genome-Wide Association Studies. Plant Cell 29 (1), pp. 5 - 19 (2017)

Seymour, D.; Chae, E.; Grimm, D.; Martín Pizarro, C.; Habring, A.; Vasseur, F.; Rakitsch, B.; Borgwardt, K.; Koenig, D.; Weigel, D.: Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids. Proceedings of the National Academy of Sciences of the United States of America 113 (46), pp. E7317 - E7326 (2016)

McGaughran, A.; Rödelsperger, C.; Grimm, D.; Meyer, J.; Moreno, E.; Morgan, K.; Leaver, M.; Serobyan, V.; Rakitsch, B.; Borgwardt, K. et al.; Sommer, R.: Genomic Profiles of Diversification and Genotype-Phenotype Association in Island Nematode Lineages. Molecular Biology and Evolution 33 (9), pp. 2257 - 2272 (2016)

1001 Genomes Consortium; Alonso-Blanco, C.; Andrade, J.; Becker, C.; Bemm, F.; Bergelson, J.; Borgwardt, K.; Cao, J.; Chae, E.; Dezwaan, T. et al.; Ding, W.; Ecker, J.; Exposito-Alonso, M.; Farlow, A.; Fitz, J.; Gan, X.; Grimm, D.; Hancock, A.; Henz, S.; Holm, S.; Horton, M.; Jarsulic, M.; Kerstetter, R.; Korte, A.; Korte, P.; Lanz, C.; Lee, C.-R.; Meng, D.; Michael, T.; Mott, R.; Muliyati, N.; Nägele, T.; Nagler, M.; Nizhynska, V.; Nordborg, M.; Novikova, P.; Picó, F.; Platzer, A.; Rabanal, F.; Rodriguez, A.; Rowan, B.; Salomé, P.; Schmid, K.; Schmitz, R.; Seren, Ü.; Sperone, F.; Sudkamp, M.; Svardal, H.; Tanzer, M.; Todd, D.; Volchenboum, S.; Wang, C.; Wang, G.; Wang, X.; Weckwerth, W.; Weigel, D.; Zhou, X.: 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. Cell 166, pp. 481 - 491 (2016)

Llinares-López, F.; Grimm, D.; Bodenham, D.; Gieraths, U.; Sugiyama, M.; Rowan, B.; Borgwardt, K.: Genome-wide detection of intervals of genetic heterogeneity associated with complex traits. Bioinformatics 31 (12), pp. i240 - i249 (2015)

Grimm, D.; Azencott, C.-A.; Aicheler, F.; Gieraths, U.; MacArthur, D.; Samocha, K.; Cooper, D.; Stenson, P.; Daly, M.; Smoller, J. et al.; Duncan, L.; Borgwardt, K.: The evaluation of tools used to predict the impact of missense variants is hindered by two types of circularity. Human Mutations 36 (5), pp. 513 - 523 (2015)

Wang, C.; Liu, C.; Roquiero, D.; Grimm, D.; Schwab, R.; Becker, C.; Lanz, C.; Weigel, D.: Genome-wide analysis of local chromatin packing in Arabidopsis thaliana. Genome Research 25 (2), pp. 246 - 256 (2015)

Azencott, C.-A.; Grimm, D.; Sugiyama, M.; Kawahara, Y.; Borgwardt, K.: Efficient network-guided multi-locus association mapping with graph cuts. Bioinformatics 29 (13), pp. 171 - 179 (2013)

Grimm, D.; Hagmann, J.; Koenig, D.; Weigel, D.; Borgwardt, K.: Accurate indel prediction using paired-end short reads. BMC Genomics 14, 132 (2013)

Sugiyama, M.; Azencott, C.-A.; Grimm, D.; Kawahara, Y.; Borgwardt, K.: Multi-Task Feature Selection on Multiple Networks via Maximum Flows. In: 2014 SIAM International Conference on Data Mining, pp. 199 - 207 (Ed. Zaki, M.). 2014 SIAM International Conference on Data Mining , Philadelphia, PA, USA, April 24, 2014 - April 26, 2014. Society for Industrial and Applied Mathematics, Philadelphia, PA, USA (2014)

Azencott, C.-A.; Grimm, D.; Kawahara, Y.; Borgwardt, K.: A min-cut solution to mapping phenotypes to networks of genetic markers. In: 17th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2013). 17th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2013), Beijing, China, April 07, 2013 - April 10, 2013. (submitted)

Feragen, A.; Petersen, J.; Grimm, D.; Dirksen, A.; Pedersen, J.; Borgwardt, K.; Bruijne, M.: Geometric tree kernels: Classification of COPD from airway tree geometry. In: Information Processing in Medical Imaging, pp. 171 - 183 (Eds. Gee, J.; Joshi, S.). 23rd International Conference on Information Processing in Medical Imaging (IPMI 2013), Asilomar, CA, USA, June 28, 2013 - July 03, 2013. Springer, Berlin, Germany (2013)

Rödelsperger, C.; McGaughran, A.; Moreno, E.; Morgan, K.; Meyer, J.; Grimm, D.; Borgwardt, K.; Leaver, M.; Sommer, R.: Genome-wide patterns of selection in the nematode Pristionchus pacificus. In 15th Congress of the European Society for Evolutionary Biology (ESEB 2015), 52647, p. 237. 15th Congress of the European Society for Evolutionary Biology (ESEB 2015), Lausanne, Switzerland, August 10, 2015 - August 14, 2015. (2015)

Grimm, D.; Bodenham, D.; Gieraths, U.; Sugiyama, M.; Rowan, B.; Borgwardt, K.: Genome-wide detection of intervals of genetic heterogeneity associated with complex traits. In 23rd Annual International Conference on Intelligent Systems for Molecular Biology, 14th European Conference on Computational Biology (ISMB ECCB 2015), TP021. 23rd Annual International Conference on Intelligent Systems for Molecular Biology, 14th European Conference on Computational Biology (ISMB ECCB 2015), Dublin, Ireland, July 10, 2015 - July 15, 2015. (2015)

Llinares-López, F.; Grimm, D.; Bodenham, D.; Gieraths, U.; Sugiyama, M.; Rowan, B.; Borgwardt, K.: Genome-wide detection of intervals of genetic heterogeneity associated with complex traits. In 14th Annual International Conference On Critical Assessment of Massive Data Analysis (CAMDA), pp. 57 - 58. 14th Annual International Conference On Critical Assessment of Massive Data Analysis (CAMDA 2015) at ISMB, Dublin, Ireland, July 10, 2015 - July 11, 2015. (2015)

Azencott, C.; Grimm, D.; Smoller, J.; Duncan, L.; Borgwardt, K.: Beware of circularity: A critical assessment of the state of the art in deleteriousness prediction of missense variants. In 64th Annual Meeting of the American Society of Human Genetics (ASHG 2014), 167, p. 56. 64th Annual Meeting of the American Society of Human Genetics (ASHG 2014), San Diego, CA, USA, October 18, 2014 - October 24, 2014. (2014)

Azencott, C.-A.; Grimm, D.; Sugiyama, M.; Kawahara, Y.; Borgwardt, K.: Efficient network-guided multi-locus association mapping with graph cuts. In MLSB13: Seventh Workshop on Machine Learning in Systems Biology, p. 31. Seventh Workshop on Machine Learning in Systems Biology (MLSB 2013) at the 21st Annual International Conference on Intelligent Systems in Molecular Biology (ISMB), Berlin, Germany, July 19, 2013 - July 20, 2013. (2013)