Schön, T.: Christensenella minuta has minor effects on gut microbiome composition but modulates host energy expenditure in mice. Dissertation, Eberhard-Karls-Universität, Tübingen, Germany (2023)

Moreono, L.: On bioinformatics of the human gut virome. Dissertation (2022)

de la Cuesta Zuluaga, J.: Insights Into the Human Gut Microbiome and its Link with Obesity and Cardiometabolic Diseases. Dissertation, 166 pp., Eberhard-Karls-Universität, Tübingen, Germany (2022)

Ley, R.: To Which Extent Do Genetics Determine the Composition of the Gut Microbiome? (2017)

Huus, K.; μHEAT Clinical Study Group; Tan, Y.; Abo, H.; Keller, R.; Atay, E.; Vu, D.; Dauser, S.; Prokipchuk, A.; Tyakht, A. et al.; Youngblut, N.; Chassaing, B.; Kang, S.-M.; Parsonnet, J.; Kremsner, P.; Maier, L.; Gewirtz, A.; Esen, M.; Ley, R.: Flagellin in the human gut microbiome is a diet-adjustable adjuvant for vaccination. (submitted)

Makki, K.; Martino, M.; Alberdi, A.; Aizpurua, O.; Quagliariello, A.; Olsson, A.; Clasen, S.; Jonsson, J.; Brolin, H.; Dwibedi, C. et al.; Yang, G.; Favero, C.; Bergh, P.-O.; Schnupf, M.; Ley, R.; Khan, M.-T.; Tremaroli, V.; Backhed, F.: Characterization and description of Clostridium filamentum ETTB, a novel gut bacterium with TLR5 modulating properties. (submitted)

Ngwese, M.; Adegbite, B.; Zinsou, J.; Fitzstevens, J.; Schmidt, V.; Moure, A.; Maloum, M.; Tyakht, A.; Huus, K.; Youngblut, N. et al.; Kremsner, P.; Adegnika, A.; Ley, R.: Infection with gut parasites correlates with gut microbiome diversity across human populations in Africa. (submitted)

Suzuki, T.; Akbuğa-Schön, T.; Waters, J.; Jakob, D.; Vu, D.; Ballinger, M.; Di Rienzi, S.; Chang, H.; de Araujo, I.; Tyakht, A. et al.; Ley, R.: Selection and transmission of the gut microbiome alone shifts mammalian behavior. (submitted)

Bell, M.; Haag, M.; Clasen, S.; Boecker, M.; Maksymenko, K.; Koch, I.; Hipp, K.; Hartmann, M.; Weir, J.; Merino, F. et al.; Ley, R.: Kinetic and structure-based comparisons of silent and stimulatory flagellin interactions with TLR5. (submitted)

Li, Z.; Cranganore, S.; Youngblut, N.; Kilbertus, N.: Whole Genome Transformer for Gene Interaction Effects in Microbiome Habitat Specificity. (submitted)

Enav, H.; Ley, R.: SynTracker: a synteny based tool for tracking microbial strains. (submitted)

Schlamp, F.; Zhang, D.; Beltrán, J.; Cosgrove, E.; Simecek, P.; Edwards , M.; Goodrich, J.; Ley, R.; Pack, A.; Churchill , G. et al.; Clark, A.: High-resolution QTL mapping with Diversity Outbred mice identifies genetic variants that impact gut microbiome composition. (submitted)