Three-Dimensional Structures

X-Ray Crystallography, NMR Spectroscopy and Computational Methods

Structures obtained by X-ray crystallography, NMR spectroscopy and computational methods.

X-Ray Crystallography Structures

Name		Description		Download		RSCB PDB
Cereblon		Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Thalidomide, Y101F mutant		4V32.pdb		PDB
Cereblon		Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Deoxyuridine		4V31.pdb		PDB
Cereblon		Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Lenalidomide		4V30.pdb		PDB
Cereblon		Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Thalidomide		4V2Y.pdb		PDB
NAGK-PII		N-acetylglutamate kinase from Arabidopsis thaliana in complex with PII from Chlamydomonas reinhardtii		4USJ.pdb		PDB
PII-MgATP-2og		Nitrogen regulatory protein PII from Chlamydomonas reinhardtii in complex with MgATP and 2-oxoglutarate		4USI.pdb		PDB
PII		Nitrogen regulatory protein PII from Chlamydomonas reinhardtii in unliganded state		4USH.pdb		PDB
Af1503-sol		Transmembrane receptor Af1503 from Archaeoglobus fulgidus engineered for solubility		4CQ4.pdb		PDB
Af1503-Tsr		Structure of Hamp(AF1503) - Tsr fusion - Hamp (A291V) mutant		3ZX6.pdb		PDB
FtsH-N		Escherichia coli FtsH hexameric N-domain		4V0B.pdb		PDB
ANDREI-N-LVPAS		ANDREI-N-LVPAS fused to CGN4 adaptors		4C46.pdb		PDB
SadB		Salmonella enterica trimeric lipoprotein SadB		4C47.pdb		PDB
SadA K2		Salmonella enterica SadA 303-358 fused to GCN4 adaptors		3ZMF.pdb		PDB
SadA K14		Salmonella enterica SadA 1185-1386 fused to GCN4 adaptors		3YO3.pdb		PDB
SadA K12		Salmonella enterica SadA 255-358 fused to GCN4 adaptors		2YO2.pdb		PDB
SadA K9-cfII		Salmonella enterica SadA 1049-1304 fused to GCN4 adaptors		2YO1.pdb		PDB
SadA K9-cfI		Salmonella enterica SadA 1049-1304 fused to GCN4 adaptors		2YO0.pdb		PDB
SadA K5		Salmonella enterica SadA 823-947 fused to a GCN4 adaptor		2YNZ.pdb		PDB
SadA K1		Salmonella enterica SadA 255-302 fused to GCN4 adaptors		2YNY.pdb		PDB
EIBD		E. coli IgG-binding fragment 160-418 of trimeric autotransporter adhesin		2XQH.pdb		PDB
EIBD		E. coli IgG-binding protein D 391-438 fused to GCN4 adaptors		2XZR.pdb		PDB
HAMP mutant		The mechanisms of HAMP-mediated signaling in transmembrane receptors-A291I mutant		2Y20.pdb		PDB
HAMP mutant		The mechanisms of HAMP-mediated signaling in transmembrane receptors-A291V mutant		2Y21.pdb		PDB
HAMP mutant		The mechanisms of HAMP-mediated signaling in transmembrane receptors-A291F mutant		2Y0T.pdb		PDB
HAMP mutant		The mechanisms of HAMP-mediated signaling in transmembrane receptors-A291C mutant		2Y0Q.pdb		PDB
KH-CPSF		Crystal structure of a dimeric archaeal cleavage and polyadenylation specificity factor		2XR1.pdb		PDB
HAMP mutant		The high resolution structure of a dimeric Hamp-Dhp fusion displays strong asymmetry		3ZRX.pdb		PDB
HAMP mutant		The structure of the dimeric Hamp-Dhp fusion A291V mutant		3ZRW.pdb		PDB
HAMP mutant		The high resolution structure of a dimeric Hamp-Dhp fusion displays asymmetry		3ZRV.pdb		PDB
yadA M4		Strong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes.		3LT6.pdb		PDB
yadA M3		Strong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes.		3LT7.pdb		PDB
yadA M1		Strong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes.		3H7Z.pdb		PDB
yadA		Strong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes.		3H7X.pdb		PDB
CGN4 mutant		CGN4 leucine zipper mutant with three IXXNTXX motifs coordinating chloride and nitrate		2WQ3.pdb		PDB
CGN4 mutant		CGN4 leucine zipper mutant with three IXXNTXX motifs coordinating iodide		2WQ2.pdb		PDB
CGN4 mutant		CGN4 leucine zipper mutant with three IXXNTXX motifs coordinating bromide		2WQ1.pdb		PDB
CGN4 mutant		CGN4 leucine zipper mutant with three IXXNTXX motifs coordinating chloride		2WQ0.pdb		PDB
CGN4 mutant		CGN4 leucine zipper mutant with two VXXNXXX motifs coordinating chloride		2WPZ.pdb		PDB
CGN4 mutant		CGN4 leucine zipper mutant with one VXXNXXX motif coordinating chloride		2WPY.pdb		PDB
Sada K3B-V2		Salmonella Enterica Sada 483-523 fused to CGN-4 adaptors		2WPS.pdb		PDB
Sada K3B-V1		Salmonella Enterica Sada 483-523 fused to CGN-4 adaptors		2WPR.pdb		PDB
Sada K3		Salmonella Enterica Sada 479-519 fused to CGN-4 adaptors		2WPQ.pdb		PDB
ARC-N		ARC-NΔcc (78-227) from Rhodococcus erythropolis		2WFW.pdb		PDB
PAN-N		Proteasome-activating nucleotidase (PAN) N-domain (57-134) from Archaeoglobus fulgidus fused to GCN4		2WG5.pdb		PDB
PAN-N (P61A)		Proteasome-activating nucleotidase (PAN) N-domain (57-134) from Archaeoglobus fulgidus fused to GCN4		2WG6.pdb		PDB
SpoVT-FL		Crystal Structure of B. Subtilis SpoVT		2W1T.pdb		PDB
SpoVT-CT domain		Crystal Structure of the C-Terminal Domain of B. Subtilis SpoVT		2W1R.pdb		PDB
BadA		Structure of two domains of the head of the Bartonella adhesin BadA		3D9X.pdb		PDB
Mj0056		Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with PO4		2VBS.pdb		PDB
Mj0056		Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with CDP and PO4		2VBT.pdb		PDB
Mj0056		Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with CDP		2VBU.pdb		PDB
Mj0056		Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with CDP and FMN		2VBV.pdb		PDB

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NMR Structures

Name		Description		Download		RSCB PDB
Yme1-N		The N-domain of the AAA metalloproteinase Yme1 from Saccharomyces cerevisiae		2MV3.pdb		PDB
FtsH-N		The solution structure of the FtsH periplasmic N-domain		2MUY.pdb		PDB
A291F variant		The solution structure of the HAMP domain of the hypothetical transmembrane receptor Af1503		2L7I.pdb		PDB
Af1503 HAMP		The solution structure of the HAMP domain of the hypothetical transmembrane receptor Af1503		2L7H.pdb		PDB
A219F var		Solution structure of the chimeric Af1503 HAMP-EnvZ DHp homodimer; A219F variant		2LFS.pdb		PDB
DHp HomDim		Solution structure of the chimeric Af1503 HAMP-EnvZ DHp homodimer		2LFR.pdb		PDB
Mj0056		Solution structure of Mj0056		2P3M.pdb		PDB
PhS018		The solution structure of PHS018 from Pyrococcus horikoshii (22 models)		2GLW.pdb		PDB
AbrB		The Solution Structure Of The N-Domain Of The Transcription Factor AbrB (22 models)		1YSF.pdb		PDB
AbrB		The Solution Structure Of The N-Domain Of The Transcription Factor AbrB (mean)		1YFB.pdb		PDB

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Computational Models

Name		Description		Download
Plasm.Hsp101		Hexameric model of Plasmodium Hsp101 assembled from monomers modeled by homology to 1QVR		PfClpB-6mer.pdb
Thermus ClpB		Hexameric model of Thermus thermophilus ClpB based on the monomeric structure 1QVR		ClpBmod.pdb
Apoptosome		Ring model of the apoptosome. The monomer of Apaf-1 (1Z6T) was modeled as a heptameric ring structure and placed in the center of the domain model by C. Akey and coworkers (PubMed)		Apopt.mod.pdb
BadA		Model structure of the full head of the BadA fiber		BadAhmod.pdb
YadA		New model structure of the full YadA fiber		YadAmodv2.pdb
YadA		Old model structure of the full YadA fiber		YadAmod.pdb
OmpW		Model structure of the outer membrane beta barrel protein OmpW		OmpW mod.pdb