Publications of V Alva

Kopec, K.; Alva, V.; Lupas, A.: Bioinformatics of the TULIP domain superfamily. Biochemical Society Transactions 39 (4), pp. 1033 - 1038 (2011)

Kopec, K.; Alva, V.; Lupas, A.: Homology of SMP domains to the TULIP superfamily of lipid-binding proteins provides a structural basis for lipid exchange between ER and mitochondria. Bioinformatics 26 (16), pp. 1927 - 1931 (2010)

Alva, V.; Remmert, M.; Biegert, A.; Lupas, A.; Söding, J.: A galaxy of folds. Protein Science 19 (1), pp. 124 - 130 (2010)

Alva, V.; Dunin-Horkawicz, S.; Habeck, M.; Coles, M.; Lupas, A.: The GD box: a widespread noncontiguous supersecondary structural element. Protein Science 18 (9), pp. 1961 - 1966 (2009)

Alva, V.; Dunin-Horkawicz, S.; Habeck, M.; Coles, M.; Lupas, A.: The GD box: A widespread non-contiguous supersecondary structural element. Protein Science 18 (9), pp. 1961 - 1966 (2009)

Alva, V.; Koretke, K.; Coles, M.; Lupas, A.: Cradle-loop barrels and the concept of metafolds in protein classification by natural descent. Current Opinion in Structural Biology 18 (3), pp. 358 - 365 (2008)

Ammelburg, M.; Hartmann, M.; Djuranovic, S.; Alva, V.; Koretke, K.; Martin, J.; Sauer, G.; Truffault, V.; Zeth, K.; Lupas, A. et al.; Coles, M.: A CTP-dependent archaeal riboflavin kinase forms a bridge in the evolution of cradle-loop barrels. Structure 15 (12), pp. 1577 - 1590 (2007)

Alva, V.; Ammelburg, M.; Söding, J.; Lupas, A.: On the origin of the histone fold. BMC Structural Biology 7, 17 (2007)

Hu, Y.; Schwab, S.; Escudeiro, P.; van Heesch, T.; Vreede, J.; Hartmann, M.; Lupas, A.; Dame, R.; Alva, V.; Hernandez Alvarez, B.: Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. In Molecular Origins of LIFE, p. 59. Molecular Origins of LIFE (MOM 2024), München, Germany, July 19, 2024 - July 20, 2024. (2024)

Alva, V.: On the Structure and Evolution of Prokaryotic Surface-Layer Proteins. In Protein Evolution Meeting Münster, p. 18. Protein Evolution Meeting Münster (PEMM 2023), Münster, Germany, July 03, 2023 - July 05, 2023. (2023)

Alva, V.: Protein Sequence Analysis Using the MPI Bioinformatics Toolkit. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 9. 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 04, 2022 - September 09, 2022. (2022)

Dobbelstein, A.; Lupas, A.; Alva, V.: Variety of domains in trimeric autotransporter adhesins. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 17. 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 04, 2022 - September 09, 2022. (2022)

Ludwiczak, J.; Winski, A.; Hernandez-Alvarez, B.; Alva, V.; Malicki, M.; Marinho da Silva Neto, A.; Szczepaniak, K.; Dunin-Horkawicz, S.: Machine learning and simulation methods for deciphering sequence-structure relationships in proteins. In BioInformatics in Torun 2019 - BIT19, p. 4. BioInformatics in Torun 2019 (BIT19), Torun, Poland, June 27, 2019 - June 29, 2019. (2019)

Ludwiczak, J.; Wiński, A.; Marinho da Silva Neto, A.; Szczepaniak, K.; Alva, V.; Dunin-Horkawicz, S.: PiPred: a deep-learning method for prediction of pi-helices in protein sequences. In BioInformatics in Torun 2019 - BIT19, p. 61. BioInformatics in Torun 2019 (BIT19), Torun, Poland, June 27, 2019 - June 29, 2019. (2019)

Ludwiczak, J.; Wiński, A.; Szczepaniak, K.; Alva, V.; Dunin-Horkawicz, S.: DeepCoil: a fast and accurate prediction of coiled-coil domains in protein sequences. In BioInformatics in Torun 2019 - BIT19, p. 40. BioInformatics in Torun 2019 (BIT19), Torun, Poland, June 27, 2019 - June 29, 2019. (2019)

Alva, V.; Zhu, H.; Hartmann, M.; Pereira, J.; Springer, F.; Martin, J.; Lupas, A.: Ribosomal proteins as documents of the transition from unstructured polypeptides to folded proteins. In CAS Conference 2018: Molecular Origins of LIFE, p. 19. CAS Conference 2018: Molecular Origins of LIFE, München, Germany, October 11, 2018 - October 12, 2018. (2018)

Alva, V.; Nam, S.-Z.; Rau, D.; Stephens, A.; Kübler, J.; Lozajic, M.; Gabler, F.; Söding, J.; Lupas, A.: The MPI Bioinformatics Toolkit and its application to protein analysis and design. In 7th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 5. 7th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 03, 2017 - September 08, 2017. (2017)

Alva, V.: Molecular Logic of Prokaryotic Surface Layers. Distinguished Speaker Seminar Series (DSSS): Max-Planck-Campus , Tübingen, Germany (2023)

Alva Kullanja, V.; Soeding, J.; Lupas, A.: On the origin of folded proteins from ancient peptides. 23rd Annual International Conference on Intelligent Systems for Molecular Biology, 14th European Conference on Computational Biology (ISMB ECCB 2015), Dublin, Ireland (2015)

Rados, T.; Leland, O.; Escudeiro, P.; Mallon, J.; Andre, K.; Caspy, I.; von Kügelgen, A.; Stolovicki, E.; Nguyen, S.; Patop, I. et al.; Rangel, T.; Kadener, S.; Renner, L.; Thiel, V.; Soen, Y.; Bharat, T.; Alva, V.; Bisson, A.: Tissue-Like Multicellular Development Triggered by Mechanical Compression in Archaea. (submitted)