Publications of RE Ley

Jackson, M.; Goodrich, J.; Maxan, M.-E.; Freedberg, D.; Abrams, J.; Poole, A.; Sutter, J.; Welter, D.; Ley, R.; Bell, J. et al.; Spector, T.; Steves, S.: Proton pump inhibitors alter the composition of the gut microbiota. Gut 65 (5), pp. 749 - 756 (2016)

Poole, A.; Pischel, L.; Ley, C.; Suh, G.; Goodrich, J.; Haggerty, T.; Ley, R.; Parsonnet, J.: Crossover Control Study of the Effect of Personal Care Products Containing Triclosan on the Microbiome. mSphere 1 (3), e00056-15 (2016)

Goodrich, J.; Davenport, E.; Waters, J.; Clark, A.; Ley, R.: Cross-species comparisons of host genetic associations with the microbiome. Science 352 (6285), pp. 532 - 535 (2016)

Ley, R.: Gut microbiota in 2015: Prevotella in the gut: choose carefully. Nature Reviews Gastroenterology & Hepatology 13 (2), pp. 69 - 70 (2016)

Sun, S.; Lourie, R.; Cohen, S.; Ji, Y.; Goodrich, J.; Poole, A.; Ley, R.; Denkers, E.; McGuckin, M.; Long, Q. et al.; Duhamel, G.; Simpson, K.; Qi, L.: Epithelial Sel1L is required for the maintenance of intestinal homeostasis. Molecular Biology of the Cell 27 (3), pp. 483 - 490 (2016)

Friedman, E.; McPhillips, L.; Werner, J.; Poole, A.; Ley, R.; Walter, M.; Angenent, L.: Methane Emission in a Specific Riparian-Zone Sediment Decreased with Bioelectrochemical Manipulation and Corresponded to the Microbial Community Dynamics. Frontiers in Microbiology 6, 1523 (2016)

Jackson, M.; Jeffery, I.; Beaumont, M.; Bell, J.; Clark, A.; Ley, R.; O'Toole, P.; Spector, T.; Steves, C.: Signatures of early frailty in the gut microbiota. Genome Medicine 8, 8 (2016)

Jin, Z.; Di Rienzi, S.; Werner, J.; Angenent, L.; Dangl, J.; Fowle, D.; Ley, R.: Novel Rhizosphere Soil Alleles for the Enzyme 1-Aminocyclopropane-1-Carboxylate Deaminase Queried for Function with an In Vivo Competition Assay. Applied and Environmental Microbiology 82 (4), pp. 1050 - 1059 (2015)

Blekhman, R.; Goodrich, J.; Huang, K.; Sun, Q.; Bukowski, R.; Bell, J.; Spector, T.; Keinan, A.; Ley, R.; Gevers, D. et al.; Clark, A.: Host genetic variation impacts microbiome composition across human body sites. Genome Biology: Biology for the Post-Genomic Era 16 (1), 191 (2015)

Barrios, C.; Beaumont, M.; Pallister, T.; Villar, J.; Goodrich, J.; Clark, A.; Pascual, J.; Ley, R.; Spector, T.; Bell, J. et al.; Menni, C.: Gut-Microbiota-Metabolite Axis in Early Renal Function Declin. PLoS One 10 (8), e0134311 (2015)

Hacquard, S.; Garrido Oter, R.; González, A.; Spaepen, S.; Ackermann, G.; Lebeis, S.; McHardy, A.; Dangl, J.; Knight, R.; Ley, R. et al.; Schulze-Lefert, P.: Microbiota and Host Nutrition across Plant and Animal Kingdoms. Cell Host & Microbe 17 (5), pp. 603 - 613 (2015)

Chassaing, B.; Koren, O.; Goodrich, J.; Poole, A.; Srinivasan, S.; Ley, R.; Gewirtz, A.: Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome. Nature 519 (7541), pp. 92 - 96 (2015)

Panke-Buisse, K.; Poole, A.; Goodrich, J.; Ley, R.; Kao-Kniffin, J.: Selection on soil microbiomes reveals reproducible impacts on plant function. The ISME Journal 9 (4), pp. 980 - 989 (2015)

Ley, R.: The gene-microbe link. Nature 518 (7540), p. S7 (2015)

Chassaing, B.; Ley, R.; Gewirtz, A.: Intestinal epithelial cell toll-like receptor 5 regulates the intestinal microbiota to prevent low-grade inflammation and metabolic syndrome in mice. Gastroenterology 147 (6), pp. 1363 - 1377 (2014)

Kumar, H.; Lund, R.; Laiho, A.; Lundelin, K.; Ley, R.; Isolauri, E.; Salminen, S.: Gut microbiota as an epigenetic regulator: pilot study based on whole-genome methylation analysis. mBio 5 (6), pp. e02113 - e02114 (2014)

Leifer, C.; McConkey, C.; Li, S.; Chassaing, B.; Gewirtz, A.; Ley, R.: Linking genetic variation in human Toll-like receptor 5 genes to the gut microbiome's potential to cause inflammation. Immunology Letters 162 (2), pp. 3 - 9 (2014)

Goodrich, J.; Waters, J.; Poole, A.; Sutter, J.; Koren, O.; Blekhman, R.; Beaumont, M.; van Treuren, W.; Knight, R.; Bell, J. et al.; Spector, T.; Clark, A.; Ley, R.: Human genetics shape the gut microbiome. Cell 159 (4), pp. 789 - 799 (2014)

Huttenhower, C.; Knight, R.; Brown, C.; Caporaso, J.; Clemente, J.; Gevers, D.; Franzosa, E.; Kelley, S.; Knights, D.; Ley, R. et al.; Mahurkar, A.; Ravel, J.; Scientists for Advancement of Microbiome Research; White, O.: Advancing the microbiome research community. Cell 159 (2), pp. 227 - 230 (2014)

Goodrich, J.; Di Rienzi, S.; Poole, A.; Koren, O.; Walters, W.; Caporaso, J.; Knight, R.; Ley, R.: Conducting a microbiome study. Cell 158 (2), pp. 250 - 262 (2014)