Publications of O Stegle

Stegle, O.; Parts, L.; Durbin, R.; Winn, J.: A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies. PLoS Computational Biology 6 (5), e1000770 (2010)

Wong, H.; Stegle, O.; Rodgers, S.; Huppert, J.: A toolbox for predicting G-quadruplex formation and stability. Journal of Nucleic Acids 2010, 564946 (2010)

Rakitsch, B.; Lippert, C.; Borgwardt, K.; Stegle, O.: It is all in the noise: Efficient multi-task Gaussian process inference with structured residuals. In: Advances in Neural Information Processing Systems 26, Vol. 2, pp. 1468 - 1476 (Eds. Burges, C.; Bottou, L.; Welling, M.; Ghahramani, Z.; Weinberger, K.). 27th Annual Conference on Neural Information Processing Systems (NIPS 2013), Lake Tahoe, NV, USA, December 05, 2013 - December 10, 2013. Curran, Red Hook, NY, USA (2014)

Morris, Q.; Brenner, S.; Listgarten, J.; Stegle, O.: The future of genome-based medicine. In: Biocomputing 2013: Pacific Symposium on Biocomputing, pp. 456 - 458 (Eds. Altman, R.; Dunker, A.; Hunter, L.; Murray, T.; Klein, T.). Pacific Symposium on Biocomputing (PSB 2013), Kohala Coast, HI, USA, January 03, 2013 - January 07, 2013. World Scientific Publishing Company, Singapore (2013)

Stegle, O.; Lippert, C.; Mooij, J.; Lawrence, N.; Borgwardt, K.: Efficient inference in matrix-variate Gaussian models with iid observation noise. In: Advances in Neural Information Processing Systems 24, pp. 630 - 638 (Eds. Shawe-Taylor, J.; Zemel, R.; Bartlett, P.; Pereira, F.; Weinberger, K.). Twenty-Fifth Annual Conference on Neural Information Processing Systems (NIPS 2011), Granada, Spain, December 12, 2011 - December 17, 2011. Curran, Red Hook, NY, USA (2012)

Stegle, O.; Roth, F.; Morris, Q.; Listgarten, J.: Personalized medicine: from genotypes and molecular phenotypes towards computed therapy. In: Biocomputing 2012: Proceedings of the Pacific Symposium, pp. 323 - 326 (Eds. Altman, R.; Dunker, A.; Hunter, L.; Murray, T.; Klein, T.). Pacific Symposium on Biocomputing (PSB 2012), Kohala Coast, HI, USA, January 03, 2012 - January 07, 2012. World Scientific Publishing, Singapore (2012)

Janzing, D.; Sgouritsa, E.; Stegle, O.; Peters, J.; Schölkopf, B.: Detecting low-complexity unobserved causes. In: 27th Conference on Uncertainty in Artificial Intelligence (UAI 2011), pp. 383 - 391. 27th Conference on Uncertainty in Artificial Intelligence (UAI 2011), Barcelona, Spain, July 14, 2011 - July 17, 2011. (2011)

Rattray, M.; Stegle, O.; Sharp, K.; Winn, J.: Inference algorithms and learning theory for Bayesian sparse factor analysis. International Workshop on Statistical-Mechanical Informatics 2009 (IW-SMI 2009), Kyoto, Japan, September 13, 2009 - September 16, 2009. Journal of Physics: Conference Series 197 (1), 012002, (2009)

Stegle, O.; Denby, K.; Wild, D.; McHattie, S.; Mead, A.; Ghahramani, Z.; Borgwardt, K.: Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series. In: German Conference on Bioinformatics: GCB 2009, pp. 133 - 142 (Eds. Grosse, I.; Neumann, S.; Posch, S.; Schreiber, F.; Stadler, P.). German Conference on Bioinformatics 2009 (GCB 2009), Halle, Germany, September 28, 2009 - September 30, 2009. Gesellschaft für Informatik, Bonn, Germany (2009)

Lippert, C.; Shervashidze, N.; Stegle, O.: Relational models for generating labeled real-world graphs. In: 7th International Workshop on Mining and Learning with Graphs (MLG 2009). 7th International Workshop on Mining and Learning with Graphs (MLG 2009), Leuven, Belgium, July 02, 2009 - July 04, 2009. (2009)

Stegle, O.; Denby, K.; Wild, D.; Ghahramani, Z.; Borgwardt, K.: A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. In: Research in Computational Molecular Biology: 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009, pp. 201 - 216 (Ed. Batzoglou, S.). 13th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2009), Tucson, AZ, USA, May 18, 2009 - May 21, 2009. Springer, Berlin, Germany (2009)

Lippert, C.; Stegle, O.; Ghahramani, Z.; Borgwardt, K.: A kernel method for unsupervised structured network inference. In: Twelfth International Conference on Artificial Intelligence and Statistics (AIStats 2009), pp. 368 - 375 (Eds. Van Dyk, D.; Welling, M.). Twelfth International Conference on Artificial Intelligence and Statistics (AIStats 2009), Clearwater Beach, FL, USA, April 16, 2009 - April 18, 2009. MIT Press, Cambridge, MA, USA (2009)

Lehmann, K.; Kahles, A.; Toussaint, N.; Hüser, M.; Stark, S.; Sachsenberg, T.; Stegle, O.; Kohlbacher, O.; Sander, C.; Rätsch, G.: Comprehensive analysis of alternative splicing across tumors from 8,705 patients. In 68th Annual Meeting of the American Society of Human Genetics (ASHG 2018), 371, p. 186. 68th Annual Meeting of the American Society of Human Genetics (ASHG 2018), San Diego, CA, USA, October 16, 2018 - October 20, 2018. (2018)

Casale, F.; Rakitsch, B.; Lippert, C.; Stegle, O.: A mixed-model approach for association studies of multiple variants to a set of correlated traits. In MLSB13: Seventh Workshop on Machine Learning in Systems Biology, p. 33. Seventh Workshop on Machine Learning in Systems Biology (MLSB 2013) at the 21st Annual International Conference on Intelligent Systems in Molecular Biology (ISMB), Berlin, Germany, July 19, 2013 - July 20, 2013. (2013)

Priebe, L.; Wolf, C.; Alexander, M.; Karbalai, N.; Fröhlich, H.; Stegle, O.; Kriegel, A.; Sander, T.; Czamara, D.; Mattheisen, M. et al.; Pütz, B.; Hillmer, A.; Altmann, A.; Kluck, N.; Schölkopf, B.; Borgwardt, K.; Schramm, J.; Hoffmann, P.; Becker, A.; Nöthen, M.; Müller-Myhsok, B.; Cichon, S.: Mapping genetic and epigenetic factors influencing human hippocampal gene expression. In European journal of human genetics, 20 (Supplement 1), C08-5, p. 27. European Human Genetics Conference (ESHG 2012), Nürnberg, Germany, June 23, 2012 - June 26, 2012. Nature Publishing Group (2012)

Klotzbücher, K.; Kobayashi, Y.; Shervashidze, N.; Stegle, O.; Müller-Myhsok, B.; Weigel, D.; Borgwardt, K.: Efficient branch-and-bound techniques for two-locus association mapping. In BMC Bioinformatics, 12 (Supplement 11), A3. Seventh International Society for Computational Biology (ISCB) Student Council Symposium 2011, Wien, Austria, July 15, 2011. BioMed Central (2011)

Behr, J.; Clark, J.; Drewe, P.; Hildebrand, K.; Kover, P.; Lyngsoe, R.; Mott, E.; Osborne, R.; Rätsch, G.; Schultheiss, S. et al.; Sreedharan, V.; Steffen, J.; Stegle, O.; Toomajian, C.; Xiangchao, G.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. In HiTSeq 2011: Conference on High Throughput Sequencing Analysis and Algorithms, p. 22. HiTSeq 2011: Conference on High Throughput Sequencing Analysis and Algorithms, Wien, Austria, July 15, 2011 - July 16, 2011. (2011)

Gan, X.; Behr, J.; Steffen, J.; Hildebrand, K.; Allchin, L.; Goodstadt, L.; Stegle, O.; Drewe, P.; Lyngsoe, R.; Sreedharan, V. et al.; Osborne, E.; Toomajian, C.; Kover, P.; Rätsch, G.; Clark, R.; Mott, R.: Accurate Sequencing of 18 Genomes of Arabidopsis thaliana and Its Use in Imputing the Genome Sequences of Over 600 MAGIC Recombinant Inbred Lines. In 22nd International Conference on Arabidopsis Research (ICAR 2011), 22, p. 78. 22nd International Conference on Arabidopsis Research (ICAR 2011), Madison, WI, USA, June 22, 2011 - June 25, 2011. (2011)

Beierholm, U.; Rohe, T.; Stegle, O.; Noppeney, U.: Using the past to estimate sensory uncertainty. Computational and Systems Neuroscience Meeting (COSYNE 2016), Salt Lake City, UT, USA (2016)

Rätsch, G.; Gan, X.; Stegle, O.; Behr, J.; Drewe, P.; Drewe, P.; Steffen, J.; Clark, R.; Osborne, E.; Schultheiss, S. et al.; Sreedharan, V.; Kahles, A.; Bohnert, R.; Jean, G.; Hildebrand, K.; Toomajian, C.; Lyngsoe, R.; Derwent, P.; Kersey, P.; Belfield, E.; Harberd, N.; Kemen, E.; Kover, P.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2012), Long Beach, CA, USA (2012)