Publications of K Maksymenko

Ullrich, T.; Klimenkova, O.; Pollmann, C.; Lasram, A.; Hatskovska, V.; Maksymenko, K.; Milijaš-Jotić, M.; Schenk, L.; Lengerke, C.; Hartmann, M. et al.; Piehler, J.; Skokowa, J.; ElGamacy, M.: A Strategy to Design Protein-based Antagonists Against Type I Cytokine Receptors. PLOS Biology (accepted)

Grin, I.; Maksymenko, K.; Wörtwein, T.; ElGamacy, M.: The Damietta Server: a comprehensive protein design toolkit. Nucleic Acids Research 52 (W1), gkae297, pp. W200 - W206 (2024)

Maksymenko, K.; Maurer, A.; Aghaallaei, N.; Barry, C.; Borbarán-Bravo, N.; Ullrich, T.; Dijkstra, T.; Hernandez-Alvarez, B.; Müller, P.; Lupas, A. et al.; Skokowa, J.; ElGamacy, M.: The design of functional proteins using tensorized energy calculations. Cell Reports Methods 3 (8), 100560 (2023)

Skokowa, J.; Hernandez Alvarez, B.; Coles, M.; Ritter, M.; Nasri, M.; Haaf, J.; Aghaallaei, N.; Xu, Y.; Mir, P.; Krahl, A.-C. et al.; Rogers, K.; Maksymenko, K.; Bajoghli, B.; Welte, K.; Lupas, A.; Müller, P.; ElGamacy, M.: A topological refactoring design strategy yields highly stable granulopoietic proteins. Nature Communications 13 (1), 2948 (2022)

Maksymenko, K.; Hernandez Alvarez, B.; Ullrich, T.; Skokowa, J.; Lupas, A.; ElGamacy, M.: Damietta: A Tensorised Protein Design Engine, and Its Application in Therapeutic Protein Design. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 22. 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 04, 2022 - September 09, 2022. (2022)

Maksymenko, K.; Skokowa, J.; Müller, P.; Lupas, A.; ElGamacy, M.: Protein design of growth factor inhibitors. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 41. 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 04, 2022 - September 09, 2022. (2022)

ElGamacy, M.; Ullrich, T.; Maksymenko, K.; Lupas, A.; Hernandez, B.; Skokowa, J.: De novo design of cytokines, antikines, and novokines. In Klinische Pädiatrie, 234 (03), 0051, p. 185. 34. Jahrestagung der Kind-Philipp-Stiftung für pädiatrisch onkologische Forschung, Wilsede, Germany, June 01, 2022 - June 04, 2022. Thieme, Stuttgart, Germany (2022)

Maksymenko, K.; Skokowa, J.; Lupas, A.; Aghaallaei, N.; Müller, P.; ElGamacy, M.: De novo design of growth factor inhibiting proteins. In Klinische Pädiatrie, 234 (03), pp. 185 - 186. 34. Jahrestagung der Kind-Philipp-Stiftung für pädiatrisch onkologische Forschung, Wilsede, Germany, June 01, 2022 - June 04, 2022. Thieme, Stuttgart, Germany (2022)

Maksymenko, K.; Hernandez Alvarez, B.; Ullrich, T.; Müller, P.; Skokowa, J.; Lupas, A.; ElGamacy, M.: Damietta: A Tensorised Protein Design Engine, and Its Application in Therapeutic Protein Design. In Advances in Protein Folding, Evolution and Design (APFED 2022), p. 67. Advances in Protein Folding, Evolution and Design (APFED 2022), Bayreuth, Germany, April 06, 2022 - April 08, 2022. (2022)

Maksymenko, K.; Müller, P.; Skokowa, J.; Lupas, A.; ElGamacy, M.: Protein design of growth factor inhibitors. In Advances in Protein Folding, Evolution and Design (APFED 2022), p. 29. Advances in Protein Folding, Evolution and Design (APFED 2022) , Bayreuth, Germany, April 06, 2022 - April 08, 2022. (2022)

Maksymenko, K.; Skokowa, J.; Lupas, A.; Müller, P.; ElGamacy, M.: De novo Protein Design of Vascular Endothelial Growth Factor Inhibitors. In Protein Science, 30 (Supplement 1), 140, p. 61. 35th Anniversary Symposium of The Protein Society, July 07, 2021 - July 14, 2021. Wiley, Hoboken, New Jersey, Vereinigte Staaten (2021)

Ullrich, T.; Hernandez-Alvarez, B.; Pollmann, C.; Ritter, M.; Haaf, J.; Aghaallaei, N.; Piehler, J.; Tesakov, I.; El-Riz, M.; Maksymenko, K. et al.; Hatskovska, V.; Kandabarua, S.; Klimiankou, M.; Lengerke, C.; Welte, K.; Lupas, A.; Skokowa, J.; ElGamacy, M.: Modulating G-CSFR Signaling Using De Novo Designed Cytokines. 66th ASH Annual Meeting, San Diego, CA, USA (2024)

Wörtwein, T.; Grin, I.; Maksymenko, K.; ElGamacy, M.: A web-based toolkit for protein design. German Conference on Bioinformatics (GCB 2024), Bielefeld, Germany (2024)

Maksymenko, K.: Efficient design of protein-based binders. Dissertation, Eberhard-Karls-Universität, Tübingen, Germany (2024)

Bell, M.; Haag, M.; Clasen, S.; Boecker, M.; Maksymenko, K.; Koch, I.; Hipp, K.; Hartmann, M.; Weir, J.; Merino, F. et al.; Ley, R.: Kinetic and structure-based comparisons of silent and stimulatory flagellin interactions with TLR5. (submitted)

Ullrich, T.; Pollmann, C.; Ritter, M.; Haaf, J.; Aghaallae, N.; Tesakov, I.; El-Riz, M.; Maksymenko, K.; Hatskovska, V.; Kandabarau, S. et al.; Klimiankou, M.; Lengerke, C.; Welte, K.; Hernandez-Alvarez, B.; Müller, P.; Lupas, A.; Piehler, J.; Skokowa, J.; ElGamacy, M.: Tuning of granulopoietic signaling by de novo designed agonists. (submitted)