Publications of T Sachsenberg

Laubinger, S.; Zeller, G.; Henz, S.; Sachsenberg, T.; Widmer, C.; Widmer, C.; Naouar, N.; Vuylsteke, M.; Schölkopf, B.; Rätsch, G. et al.; Weigel, D.: At-TAX: A Whole Genome Tiling Array Resource for Developmental Expression Analysis and Transcript Identification in Arabidopsis thaliana. Genome Biology 9 (7), R112 (2008)

Laubinger, S.; Sachsenberg, T.; Zeller, G.; Busch, W.; Lohmann, J.; Rätsch, G.; Weigel, D.: Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 105 (25), pp. 8795 - 8800 (2008)

Sachsenberg, T.; Stützer, A.; Chernev, A.; Netz, E.; Dijkstra, T.; Urlaub, H.; Kohlbacher, O.: A Novel Computational Approach for Simultaneous Identification of Protein-RNA and Protein-DNA Interactions from XL-MS Data. In 67th ASMS Conference on Mass Spectrometry and Allied Topics. 67th ASMS Conference on Mass Spectrometry and Allied Topics, Atlanta, GA, USA, June 02, 2019 - June 06, 2019. (2019)

Lehmann, K.; Kahles, A.; Toussaint, N.; Hüser, M.; Stark, S.; Sachsenberg, T.; Stegle, O.; Kohlbacher, O.; Sander, C.; Rätsch, G.: Comprehensive analysis of alternative splicing across tumors from 8,705 patients. In 68th Annual Meeting of the American Society of Human Genetics (ASHG 2018), 371, p. 186. 68th Annual Meeting of the American Society of Human Genetics (ASHG 2018), San Diego, CA, USA, October 16, 2018 - October 20, 2018. (2018)

Stuetzer, A.; Chernev, A.; Sachsenberg, T.; Tauber, M.; Fischle, W.; Kohlbacher, O.: Protein-DNA Interactions Analyzed by Cross-Linking of Recombinant and Native Chromatin Samples. In 66th ASMS Conference on Mass Spectrometry and Allied Topics. 66th ASMS Conference on Mass Spectrometry and Allied Topics, San Diego, CA, USA, June 03, 2018 - June 07, 2018. (2018)

Stützer, A.; Kappert, C.; Chernev, A.; Mucek, K.; Kramer, K.; Sachsenberg, T.; Kohlbacher, O.: Mass Spectrometric Analysis of UV and Chemical protein-DNA Cross-links in a Chromatin Model. In 65th ASMS Conference on Mass Spectrometry and Allied Topics. 65th ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, USA, June 04, 2017 - June 08, 2017. (2017)

Zeller, G.; Eichner, J.; Sachsenberg, T.; Laubinger, S.; Weigel, D.; Rätsch, G.: Re-Annotating The Arabidopsis Transcriptome With Tiling Microarrays. In 4th International Society for Computational Biology Student Council Symposium, 32, p. 21. Fourth International Society for Computational Biology Student Council Symposium (ISCB 2008) , Toronto, Canada, July 18, 2008. (2008)

Netz, E.; Dijkstra, T.; Sachsenberg, T.; Kohlbacher, O.: OpenPepXL: An open-source tool for sensitive identification of cross-linked peptides in XL-MS. 68th ASMS Conference on Mass Spectrometry and Allied Topics (2020)

Bichmann, L.; Nelde, A.; Ghosh, M.; Sachsenberg, T.; Mohr, C.; Peltzer, A.; Kuchenbecker, A.; Walz, J.; Stevanović, S.; Rammensee, H.-G. et al.; Kohlbacher, O.: MHCquant: Automated and Reproducible Data Analysis for Immunopeptidomics. 67th ASMS Conference on Mass Spectrometry and Allied Topics, Atlanta, GA, USA (2019)

Netz, E.; Dijkstra, T.; Sachsenberg, T.; Kohlbacher, O.: OpenPepXL: Sensitive, Comprehensive Identification and Quantification of Protein-Protein Cross-Links. 67th ASMS Conference on Mass Spectrometry and Allied Topics, Atlanta, GA, USA (2019)

Dijkstra, T.; Sachsenberg, T.; Kohlbacher, O.: Imputation of Missing Data in Quantitative Proteomics using Singular Value Thresholding. 65th ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, USA (2017)

Netz, E.; Sachsenberg, T.; Gloeckner, C.; Kohlbacher, O.: OpenProXL: a Fast and Versatile XL-MS Identification Tool. 65th ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, USA (2017)

Sachsenberg, T.; Veit, J.; Chernev, A.; Sharma, K.; Hofele, R.; Qamar, S.; Zaman, U.; Kappert, C.; Kramer, K.; Pfeuffer, J. et al.; Liang, X.; Reinert, K.; Lenz, C.; Urlaub, H.; Kohlbacher, O.: RNPxl 2 - Protein-RNA Interaction Site Localization from UV Cross-linked Peptide-RNA Oligonucleotides in Proteome Discoverer 2.1. 64th ASMS Conference on Mass Spectrometry and Allied Topics, San Antonio, TX, USA (2016)

Laubinger, S.; Zeller, G.; Henz, S.; Sachsenberg, T.; Rätsch, G.; Weigel, D.: Transcriptome profiling of RNA-processing mutants: Uncovering the hidden layer of the Arabidopsis transcriptome. 20th International Conference on Arabidopsis Research (ICAR 2009), Edinburgh, UK (2009)

Laubinger, S.; Sachsenberg, T.; Zeller, G.; Busch, W.; Lohmann, J.; Rätsch, G.; Weigel, D.: Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. 19th International Conference on Arabidopsis Research (ICAR 2008), Montreal, Canada (2008)