Engel, D.; Kottler, V.; Malisi, C.; Röttig, M.; Willing, E.; Schultheiss, S.: Crowd-Sourcing Design: Sketch Minimization using Crowds for Feedback. In: 4th Human Computation Workshop (HCOMP 2012), WS-12-08, pp. 71 - 77. 4th Human Computation Workshop (HCOMP 2012), Toronto, ON, Canada, July 23, 2012. (2012)

Stegle, O.; Lippert, C.; Mooij, J.; Lawrence, N.; Borgwardt, K.: Efficient inference in matrix-variate Gaussian models with iid observation noise. In: Advances in Neural Information Processing Systems 24, pp. 630 - 638 (Eds. Shawe-Taylor, J.; Zemel, R.; Bartlett, P.; Pereira, F.; Weinberger, K.). Twenty-Fifth Annual Conference on Neural Information Processing Systems (NIPS 2011), Granada, Spain, December 12, 2011 - December 17, 2011. Curran, Red Hook, NY, USA (2012)

Stegle, O.; Roth, F.; Morris, Q.; Listgarten, J.: Personalized medicine: from genotypes and molecular phenotypes towards computed therapy. In: Biocomputing 2012: Proceedings of the Pacific Symposium, pp. 323 - 326 (Eds. Altman, R.; Dunker, A.; Hunter, L.; Murray, T.; Klein, T.). Pacific Symposium on Biocomputing (PSB 2012), Kohala Coast, HI, USA, January 03, 2012 - January 07, 2012. World Scientific Publishing, Singapore (2012)

Achlioptas, P.; Schölkopf, B.; Borgwardt, K.: Two-locus association mapping in subquadratic time. In: 17th ACM SIGKKD Conference on Knowledge Discovery and Data Mining (KDD 2011), pp. 726 - 734 (Eds. Apté, C.; Ghosh, J.; Smyth, P.). 17th ACM SIGKKD Conference on Knowledge Discovery and Data Mining (KDD 2011), San Diego, CA, USA, August 21, 2011 - August 24, 2011. ACM Press, New York, NY, USA (2011)

Janzing, D.; Sgouritsa, E.; Stegle, O.; Peters, J.; Schölkopf, B.: Detecting low-complexity unobserved causes. In: 27th Conference on Uncertainty in Artificial Intelligence (UAI 2011), pp. 383 - 391. 27th Conference on Uncertainty in Artificial Intelligence (UAI 2011), Barcelona, Spain, July 14, 2011 - July 17, 2011. (2011)

Kam-Thong, T.; Pütz, B.; Karbalai, N.; Müller−Myhsok, B.; Borgwardt, K.: Epistasis detection on quantitative phenotypes by exhaustive enumeration using GPUs. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB 2011), Wien, Austria, July 17, 2011 - July 19, 2011. Bioinformatics 27 (13), pp. i214 - i221 (2011)

Lei, L.; Rakitsch, B.; Borgwardt, K.: ccSVM: correcting Support Vector Machines for confounding factors in biological data classification. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB 2011), Wien, Austria, July 17, 2011 - July 19, 2011. Bioinformatics 27 (13), pp. i342 - i348 (2011)

Shervashidze, N.; Borgwardt, K.: Fast subtree kernels on graphs. In: Advances in Neural Information Processing Systems 22, pp. 1660 - 1668 (Eds. Bengio, Y.; Schuurmans, D.; Lafferty, J.; Williams, C.; Culotta, A.). 23rd Annual Conference on Neural Information Processing Systems (NIPS 2009), Vancouver, BC, Canada, December 07, 2009 - December 10, 2009. Curran, Red Hook, NY, USA (2010)

Rattray, M.; Stegle, O.; Sharp, K.; Winn, J.: Inference algorithms and learning theory for Bayesian sparse factor analysis. International Workshop on Statistical-Mechanical Informatics 2009 (IW-SMI 2009), Kyoto, Japan, September 13, 2009 - September 16, 2009. Journal of Physics: Conference Series 197 (1), 012002, (2009)

Stegle, O.; Denby, K.; Wild, D.; McHattie, S.; Mead, A.; Ghahramani, Z.; Borgwardt, K.: Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series. In: German Conference on Bioinformatics: GCB 2009, pp. 133 - 142 (Eds. Grosse, I.; Neumann, S.; Posch, S.; Schreiber, F.; Stadler, P.). German Conference on Bioinformatics 2009 (GCB 2009), Halle, Germany, September 28, 2009 - September 30, 2009. Gesellschaft für Informatik, Bonn, Germany (2009)

Lippert, C.; Shervashidze, N.; Stegle, O.: Relational models for generating labeled real-world graphs. In: 7th International Workshop on Mining and Learning with Graphs (MLG 2009). 7th International Workshop on Mining and Learning with Graphs (MLG 2009), Leuven, Belgium, July 02, 2009 - July 04, 2009. (2009)

Kondor, R.; Shervashidze, N.; Borgwardt, K.: The graphlet spectrum. In: ICML '09: Proceedings of the 26th Annual International Conference on Machine Learning, pp. 529 - 536 (Eds. Danyluk, A.; Bottou, L.; Littman, M.). 26th International Conference on Machine Learning (ICML 2009), Montreal, Canada, June 14, 2009 - June 18, 2009. ACM Press, New York, NY, USA (2009)

Schweikert, G.; Widmer, C.; Schölkopf, B.; Rätsch, G.: An Empirical Analysis of Domain Adaptation Algorithms for Genomic Sequence Analysis. In: Advances in neural information processing systems 21, M14, pp. 1433 - 1440 (Eds. Koller, D.; Schuurmans, D.; Bengio, Y.; Bottou, L.). Twenty-Second Annual Conference on Neural Information Processing Systems (NIPS 2008), Vancouver, BC, Canada, December 08, 2008 - December 10, 2008. Curran, Red Hook, NY, USA (2009)

Stegle, O.; Denby, K.; Wild, D.; Ghahramani, Z.; Borgwardt, K.: A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. In: Research in Computational Molecular Biology: 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009, pp. 201 - 216 (Ed. Batzoglou, S.). 13th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2009), Tucson, AZ, USA, May 18, 2009 - May 21, 2009. Springer, Berlin, Germany (2009)

Thoma, M.; Cheng, H.; Gretton, A.; Han, J.; Kriegel, H.-P.; Smola, A.; Song, L.; Yu, P.; Yan, X.; Borgwardt, K.: Near-optimal supervised feature selection among frequent subgraphs. In: 9th SIAM Conference on Data Mining (SDM 2009), pp. 1076 - 1087 (Eds. Park, H.; Parthasarathy, S.; Liu, H.). 9th SIAM Conference on Data Mining (SDM 2009), Sparks, NV, USA, April 30, 2009 - May 02, 2009. Philadelphia, PA, USA, Society for Industrial and Applied Mathematics (2009)

Shervashidze, N.; Vishwanathan, S.; Petri, T.; Mehlhorn, K.; Borgwardt, K.: Efficient Graphlet Kernels for Large Graph Comparison. In: Twelfth International Conference on Artificial Intelligence and Statistics (AIStats 2009), pp. 488 - 495 (Eds. Van Dyk, D.; Welling, M.). Twelfth International Conference on Artificial Intelligence and Statistics (AIStats 2009), Clearwater Beach, FL, USA, April 16, 2009 - April 18, 2009. MIT Press, Cambridge, MA, USA (2009)

Schultheiss, S.; Busch, W.; Lohmann, J.; Kohlbacher, O.; Rätsch, G.: KIRMES: Kernel-based Identification of Regulatory Modules in Euchromatic Sequences. In: German Conference on Bioinformatics: GCB 2008, pp. 158 - 167 (Eds. Beyer, A.; Schroeder, M.). German Conference on Bioinformatics 2008 (GCB 2008), Dresden, Germany, September 09, 2008 - September 12, 2008. Gesellschaft für Informatik, Bonn, Germany (2008)

Zeller, G.; Henz, S.; Laubinger, S.; Weigel, D.; Rätsch, G.: Transcript normalization and segmentation of tiling array data. In: Pacific Symposium on Biocomputing (PSB 2008), pp. 527 - 538. Pacific Symposium on Biocomputing (PSB 2008), Fairmont Orchid, HI, USA, January 04, 2008 - January 08, 2008. (2008)

Sonnenburg, S.; Schweikert, G.; Philips, P.; Behr, J.; Rätsch, G.: Accurate Splice site Prediction Using Support Vector Machines. NIPS 2006 Workshop on New Problems and Methods in Computational Biology, Whistler, Canada, December 08, 2006. BMC Bioinformatics 8 (Supplement 10), S7, (2007)

Magris, G.; Zelasco, S.; Salimonti, A.; Forgione, I.; Sirangelo, T.; Carbonell Bejerano, P.; Weigel, D.; Bagnaresi, P.; Di Gaspero, G.; Scalabrin, S. et al.; Scaglione, D.; Usai, G.; Mascagni, F.; Natali, L.; Cavallini, A.; Marchese, A.; Marra, F.; Mulas, M.; Medda, S.; Muleo, R.; Baldoni, L.; Perri, E.; Cattivelli, L.; Carbone, F.; Morgante, M.: Analysis Based on New Olive Reference Genome Has Revealed That Only a Few Generations of Sexual Reproduction Separate Cultivated Olive from Its Wild Ancestor. In Plant and Animal Genome 31 Conference (PAG 2024). Plant and Animal Genome 32 Conference (PAG 2025), San Diego, CA, USA, January 10, 2025 - January 15, 2025. (2025)